miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19207 3' -55.1 NC_004684.1 + 60597 0.66 0.811382
Target:  5'- gUCGUAgUGGccGUCGUCCAGuGCACCGg -3'
miRNA:   3'- -AGCGUgGCCuaUAGUGGGUC-UGUGGC- -5'
19207 3' -55.1 NC_004684.1 + 47141 0.66 0.810457
Target:  5'- aCGCGCCGGGccggaagUAguaccggCGCgCCAGGCGCa- -3'
miRNA:   3'- aGCGUGGCCU-------AUa------GUG-GGUCUGUGgc -5'
19207 3' -55.1 NC_004684.1 + 39090 0.66 0.805807
Target:  5'- ---gGCCGGuggugccuacgCACCCGGugACCGg -3'
miRNA:   3'- agcgUGGCCuaua-------GUGGGUCugUGGC- -5'
19207 3' -55.1 NC_004684.1 + 56335 0.66 0.802996
Target:  5'- gCGCGaguucauguCCGGGgagaucgaccagcugAUCGCCCGG-CACCGc -3'
miRNA:   3'- aGCGU---------GGCCUa--------------UAGUGGGUCuGUGGC- -5'
19207 3' -55.1 NC_004684.1 + 61290 0.66 0.802056
Target:  5'- cUGCGCCGGGUcgauuUCCGGcaGCACCGc -3'
miRNA:   3'- aGCGUGGCCUAuagu-GGGUC--UGUGGC- -5'
19207 3' -55.1 NC_004684.1 + 57029 0.66 0.802056
Target:  5'- gUGCGCUGGucgGUCACggugggCCAcGGCACCa -3'
miRNA:   3'- aGCGUGGCCua-UAGUG------GGU-CUGUGGc -5'
19207 3' -55.1 NC_004684.1 + 43362 0.66 0.802056
Target:  5'- cCGCGCCGGGcaccUugCCGGA-ACCGa -3'
miRNA:   3'- aGCGUGGCCUaua-GugGGUCUgUGGC- -5'
19207 3' -55.1 NC_004684.1 + 55545 0.66 0.802056
Target:  5'- uUCGUACCcguugccGAaGUCGCgCCAGuCGCCGg -3'
miRNA:   3'- -AGCGUGGc------CUaUAGUG-GGUCuGUGGC- -5'
19207 3' -55.1 NC_004684.1 + 7128 0.66 0.801114
Target:  5'- cCGCcaccGCCGaGGUA-CACCCGGAagguggcCACCGc -3'
miRNA:   3'- aGCG----UGGC-CUAUaGUGGGUCU-------GUGGC- -5'
19207 3' -55.1 NC_004684.1 + 23406 0.66 0.792559
Target:  5'- aCGCagcugGCCGGGUA-CGCCCGcGCACgGc -3'
miRNA:   3'- aGCG-----UGGCCUAUaGUGGGUcUGUGgC- -5'
19207 3' -55.1 NC_004684.1 + 1485 0.66 0.792559
Target:  5'- aCGCGCCGGAgGUgGCCCGccuguugcgcGAcCACUa -3'
miRNA:   3'- aGCGUGGCCUaUAgUGGGU----------CU-GUGGc -5'
19207 3' -55.1 NC_004684.1 + 42181 0.66 0.792559
Target:  5'- gCGUGCCGGugaagcCACCCGGugccaGCGCCu -3'
miRNA:   3'- aGCGUGGCCuaua--GUGGGUC-----UGUGGc -5'
19207 3' -55.1 NC_004684.1 + 24463 0.66 0.792559
Target:  5'- -aGCGCCgucaGGGUAUCACCU-GGCGgCGu -3'
miRNA:   3'- agCGUGG----CCUAUAGUGGGuCUGUgGC- -5'
19207 3' -55.1 NC_004684.1 + 47037 0.66 0.792559
Target:  5'- uUCGCaguaGCCGccc--CACCCGGAgGCCGa -3'
miRNA:   3'- -AGCG----UGGCcuauaGUGGGUCUgUGGC- -5'
19207 3' -55.1 NC_004684.1 + 28280 0.66 0.782901
Target:  5'- cCGCGCaGGcg--UACCCGGuCACCGg -3'
miRNA:   3'- aGCGUGgCCuauaGUGGGUCuGUGGC- -5'
19207 3' -55.1 NC_004684.1 + 66957 0.66 0.781927
Target:  5'- gCGCAgCGG-UGUCcucguccacgucgACCCAGuGCACCa -3'
miRNA:   3'- aGCGUgGCCuAUAG-------------UGGGUC-UGUGGc -5'
19207 3' -55.1 NC_004684.1 + 34197 0.66 0.781927
Target:  5'- aCGCaACCGaGAcgAUCACUCAcggaucacuguggGACACCGc -3'
miRNA:   3'- aGCG-UGGC-CUa-UAGUGGGU-------------CUGUGGC- -5'
19207 3' -55.1 NC_004684.1 + 6225 0.66 0.779973
Target:  5'- cCGCcgaccugGCCGGGUGgcugaccgaguaCACCCAGuCGCUGg -3'
miRNA:   3'- aGCG-------UGGCCUAUa-----------GUGGGUCuGUGGC- -5'
19207 3' -55.1 NC_004684.1 + 20013 0.66 0.773092
Target:  5'- cCGCACCGGAggccguggUGCCUgaAGACcCCGc -3'
miRNA:   3'- aGCGUGGCCUaua-----GUGGG--UCUGuGGC- -5'
19207 3' -55.1 NC_004684.1 + 9475 0.66 0.773092
Target:  5'- aUGuCAUCGGcgGUCAgCCCGGcCACCu -3'
miRNA:   3'- aGC-GUGGCCuaUAGU-GGGUCuGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.