miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19208 3' -58.4 NC_004684.1 + 26409 0.66 0.626995
Target:  5'- cCGCcaccggCGCGCUggCAGCgGGGuucGCCGCc -3'
miRNA:   3'- -GCGcaa---GUGCGA--GUCGgUCCu--CGGCG- -5'
19208 3' -58.4 NC_004684.1 + 7635 0.66 0.626995
Target:  5'- uGCGUcagcaucugggUCACGCUCccaacGGCguGGAucCCGCu -3'
miRNA:   3'- gCGCA-----------AGUGCGAG-----UCGguCCUc-GGCG- -5'
19208 3' -58.4 NC_004684.1 + 49058 0.66 0.626995
Target:  5'- -----gCAgGCUCGGCCAGGuGCuCGUc -3'
miRNA:   3'- gcgcaaGUgCGAGUCGGUCCuCG-GCG- -5'
19208 3' -58.4 NC_004684.1 + 23426 0.66 0.620621
Target:  5'- cCGCGcacggcUgAUGCUCGGCCucgacggcgagaccuGGGAGCCa- -3'
miRNA:   3'- -GCGCa-----AgUGCGAGUCGG---------------UCCUCGGcg -5'
19208 3' -58.4 NC_004684.1 + 13108 0.66 0.616373
Target:  5'- uGCGcgCACcCcCGGCCGGGuGGCgGCg -3'
miRNA:   3'- gCGCaaGUGcGaGUCGGUCC-UCGgCG- -5'
19208 3' -58.4 NC_004684.1 + 15367 0.66 0.616372
Target:  5'- uCGCGgagCGCGCgcuggugaUCGGCUAcGAGgCCGCc -3'
miRNA:   3'- -GCGCaa-GUGCG--------AGUCGGUcCUC-GGCG- -5'
19208 3' -58.4 NC_004684.1 + 58697 0.66 0.616372
Target:  5'- uGCGgcuaacagaccUCACGCaCGGCCacAGGcaccuGGCCGCa -3'
miRNA:   3'- gCGCa----------AGUGCGaGUCGG--UCC-----UCGGCG- -5'
19208 3' -58.4 NC_004684.1 + 65583 0.66 0.616372
Target:  5'- cCGCcaUgGC-CUCGGUCAuGAGCCGCa -3'
miRNA:   3'- -GCGcaAgUGcGAGUCGGUcCUCGGCG- -5'
19208 3' -58.4 NC_004684.1 + 26480 0.66 0.616372
Target:  5'- aGCGUgcccgcCAUGCUCAuGCCuGGcGAGCaCGUg -3'
miRNA:   3'- gCGCAa-----GUGCGAGU-CGG-UC-CUCG-GCG- -5'
19208 3' -58.4 NC_004684.1 + 11912 0.66 0.605762
Target:  5'- gCGCGgcacCACcgaCAGCCAGG-GCCGUc -3'
miRNA:   3'- -GCGCaa--GUGcgaGUCGGUCCuCGGCG- -5'
19208 3' -58.4 NC_004684.1 + 41779 0.66 0.605762
Target:  5'- gGCGU--ACGgacgCGGCCAGGuGCCGa -3'
miRNA:   3'- gCGCAagUGCga--GUCGGUCCuCGGCg -5'
19208 3' -58.4 NC_004684.1 + 35892 0.66 0.605762
Target:  5'- -aCGUUCG-GCggucgCGGCCAGGuGGaCCGCa -3'
miRNA:   3'- gcGCAAGUgCGa----GUCGGUCC-UC-GGCG- -5'
19208 3' -58.4 NC_004684.1 + 33113 0.66 0.605762
Target:  5'- gGCGcUCGCGCU-GGCCAaGGuGCUcgGCa -3'
miRNA:   3'- gCGCaAGUGCGAgUCGGU-CCuCGG--CG- -5'
19208 3' -58.4 NC_004684.1 + 28967 0.66 0.599406
Target:  5'- aCGUGgUCAccccCGCaUCGGCCAGGuucucggucuccacGCCGCc -3'
miRNA:   3'- -GCGCaAGU----GCG-AGUCGGUCCu-------------CGGCG- -5'
19208 3' -58.4 NC_004684.1 + 46966 0.66 0.595174
Target:  5'- aGCGc-CAgGCUgAugcGCCAGGAGUCGUc -3'
miRNA:   3'- gCGCaaGUgCGAgU---CGGUCCUCGGCG- -5'
19208 3' -58.4 NC_004684.1 + 10230 0.66 0.595174
Target:  5'- aGCGU--GCGCgUCGGCCAcc-GCCGCc -3'
miRNA:   3'- gCGCAagUGCG-AGUCGGUccuCGGCG- -5'
19208 3' -58.4 NC_004684.1 + 1909 0.66 0.595174
Target:  5'- gGUGgcCAaaCUCAGCCaAGGAGCCucaGCg -3'
miRNA:   3'- gCGCaaGUgcGAGUCGG-UCCUCGG---CG- -5'
19208 3' -58.4 NC_004684.1 + 65889 0.66 0.584614
Target:  5'- aGCGcggCGCGCaggUUGGCCAccaGGGCCGCc -3'
miRNA:   3'- gCGCaa-GUGCG---AGUCGGUc--CUCGGCG- -5'
19208 3' -58.4 NC_004684.1 + 64095 0.66 0.584614
Target:  5'- uCGCGcUCGCGCUguGCCAuG-GCCu- -3'
miRNA:   3'- -GCGCaAGUGCGAguCGGUcCuCGGcg -5'
19208 3' -58.4 NC_004684.1 + 56896 0.66 0.574092
Target:  5'- gGCGgccCAgUGCgUCGGCCGGGucuuGCCGUc -3'
miRNA:   3'- gCGCaa-GU-GCG-AGUCGGUCCu---CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.