miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19208 5' -54.6 NC_004684.1 + 54124 0.66 0.810027
Target:  5'- cCGGCGGCca--CCAGCgCGcugGCGGUCAc -3'
miRNA:   3'- -GCCGUCGaacgGGUUG-GCa--UGCUAGU- -5'
19208 5' -54.6 NC_004684.1 + 20212 0.66 0.810027
Target:  5'- cCGcGCAGCggcgGCCCuggccGCCGcUACGGUg- -3'
miRNA:   3'- -GC-CGUCGaa--CGGGu----UGGC-AUGCUAgu -5'
19208 5' -54.6 NC_004684.1 + 21194 0.66 0.800547
Target:  5'- gGGCGGCUauacgcacGCCUAcCUGUGCGGguUCAc -3'
miRNA:   3'- gCCGUCGAa-------CGGGUuGGCAUGCU--AGU- -5'
19208 5' -54.6 NC_004684.1 + 9814 0.66 0.800547
Target:  5'- uCGGUAGgUUGCgggcgaugucggCCAACCGgcgcagcucgGCGGUCGc -3'
miRNA:   3'- -GCCGUCgAACG------------GGUUGGCa---------UGCUAGU- -5'
19208 5' -54.6 NC_004684.1 + 52832 0.66 0.800547
Target:  5'- cCGGC-GCaccaggUGUCCAGCgGUACGccGUCAu -3'
miRNA:   3'- -GCCGuCGa-----ACGGGUUGgCAUGC--UAGU- -5'
19208 5' -54.6 NC_004684.1 + 25113 0.66 0.790893
Target:  5'- gGGCGuGCUggauUGCCCAGgUGU-CGGUCu -3'
miRNA:   3'- gCCGU-CGA----ACGGGUUgGCAuGCUAGu -5'
19208 5' -54.6 NC_004684.1 + 36729 0.66 0.782064
Target:  5'- aGGUGGUaUGCCCGcaccuggagccggauGCCGUucuggcccgccgucGCGGUCAc -3'
miRNA:   3'- gCCGUCGaACGGGU---------------UGGCA--------------UGCUAGU- -5'
19208 5' -54.6 NC_004684.1 + 51035 0.66 0.781075
Target:  5'- cCGGCAGgaUGCggCCAccGCCGgugACGAUg- -3'
miRNA:   3'- -GCCGUCgaACG--GGU--UGGCa--UGCUAgu -5'
19208 5' -54.6 NC_004684.1 + 63874 0.66 0.781075
Target:  5'- uGGCGGCcuucaucggGCCCAGCgGUGCcagguGGUCc -3'
miRNA:   3'- gCCGUCGaa-------CGGGUUGgCAUG-----CUAGu -5'
19208 5' -54.6 NC_004684.1 + 30787 0.66 0.781075
Target:  5'- uGGguGCUgcUGUCCGgcaccuacACCGUGCcGUCGg -3'
miRNA:   3'- gCCguCGA--ACGGGU--------UGGCAUGcUAGU- -5'
19208 5' -54.6 NC_004684.1 + 48713 0.67 0.760991
Target:  5'- gCGGCGGCccUGCCagcgcuuGCCGgugGCGAUg- -3'
miRNA:   3'- -GCCGUCGa-ACGGgu-----UGGCa--UGCUAgu -5'
19208 5' -54.6 NC_004684.1 + 55042 0.67 0.760991
Target:  5'- uGcGCAGUgUGCCCAGCgCGgu-GAUCAa -3'
miRNA:   3'- gC-CGUCGaACGGGUUG-GCaugCUAGU- -5'
19208 5' -54.6 NC_004684.1 + 9776 0.67 0.760991
Target:  5'- gGGUGGCUgGCCguACCGcucgugcACGGUCAc -3'
miRNA:   3'- gCCGUCGAaCGGguUGGCa------UGCUAGU- -5'
19208 5' -54.6 NC_004684.1 + 34831 0.67 0.759972
Target:  5'- aCGGCGGUcUGCUgcgcaugCAGCCGUggGCGGUUc -3'
miRNA:   3'- -GCCGUCGaACGG-------GUUGGCA--UGCUAGu -5'
19208 5' -54.6 NC_004684.1 + 45212 0.67 0.750747
Target:  5'- gCGGCAGCgcGUCCAugCGgcgcuuggUGCuGGUCAg -3'
miRNA:   3'- -GCCGUCGaaCGGGUugGC--------AUG-CUAGU- -5'
19208 5' -54.6 NC_004684.1 + 33213 0.67 0.750747
Target:  5'- aCGGaCAGCccggcgGCCCAACUGcuUACGcUCAc -3'
miRNA:   3'- -GCC-GUCGaa----CGGGUUGGC--AUGCuAGU- -5'
19208 5' -54.6 NC_004684.1 + 48366 0.67 0.750747
Target:  5'- uCGGaguGCUUGCCgGugUGgugcACGAUCAg -3'
miRNA:   3'- -GCCgu-CGAACGGgUugGCa---UGCUAGU- -5'
19208 5' -54.6 NC_004684.1 + 24539 0.67 0.750747
Target:  5'- aCGGCGGUgUGCCgGGCC--GCGAUa- -3'
miRNA:   3'- -GCCGUCGaACGGgUUGGcaUGCUAgu -5'
19208 5' -54.6 NC_004684.1 + 46744 0.67 0.729913
Target:  5'- gCGGCGGUaUUGUCCAG-CGUGCGGa-- -3'
miRNA:   3'- -GCCGUCG-AACGGGUUgGCAUGCUagu -5'
19208 5' -54.6 NC_004684.1 + 36384 0.67 0.719346
Target:  5'- cCGGuCGGCgucagGCCCAGCUGcGCcAUCAg -3'
miRNA:   3'- -GCC-GUCGaa---CGGGUUGGCaUGcUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.