Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 19209 | 3' | -59.5 | NC_004684.1 | + | 10809 | 0.7 | 0.310149 |
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Target: 5'- aGCGGCaUCcggcGGCuGGGCCGCACcgAGUGa -3' miRNA: 3'- aUGCCG-AGaa--UCG-CCCGGCGUG--UCGC- -5' |
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| 19209 | 3' | -59.5 | NC_004684.1 | + | 24537 | 0.71 | 0.274615 |
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Target: 5'- cUACGGCgguguGcCGGGCCGCgAUAGCGu -3' miRNA: 3'- -AUGCCGagaauC-GCCCGGCG-UGUCGC- -5' |
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| 19209 | 3' | -59.5 | NC_004684.1 | + | 33525 | 0.72 | 0.236365 |
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Target: 5'- gGCGGCUau--GCgGGGUCGUACGGCa -3' miRNA: 3'- aUGCCGAgaauCG-CCCGGCGUGUCGc -5' |
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| 19209 | 3' | -59.5 | NC_004684.1 | + | 63154 | 0.74 | 0.164315 |
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Target: 5'- gUGCGGCUCcu-GCGcGCCGCGCAGgCGc -3' miRNA: 3'- -AUGCCGAGaauCGCcCGGCGUGUC-GC- -5' |
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| 19209 | 3' | -59.5 | NC_004684.1 | + | 43441 | 0.75 | 0.129059 |
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Target: 5'- gUACaGGCUCggcaGGCGGguGCCGCGCAGCu -3' miRNA: 3'- -AUG-CCGAGaa--UCGCC--CGGCGUGUCGc -5' |
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| 19209 | 3' | -59.5 | NC_004684.1 | + | 66507 | 0.75 | 0.136234 |
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Target: 5'- gGCGGC-CUc-GCGGGCCGCcuuCAGCGc -3' miRNA: 3'- aUGCCGaGAauCGCCCGGCGu--GUCGC- -5' |
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| 19209 | 3' | -59.5 | NC_004684.1 | + | 37454 | 1.06 | 0.000716 |
|
Target: 5'- gUACGGCUCUUAGCGGGCCGCACAGCGc -3' miRNA: 3'- -AUGCCGAGAAUCGCCCGGCGUGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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