miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19209 3' -59.5 NC_004684.1 + 51321 0.67 0.475351
Target:  5'- -uCGGCUCaccGGCGGGCCaCGCuuGCu -3'
miRNA:   3'- auGCCGAGaa-UCGCCCGGcGUGu-CGc -5'
19209 3' -59.5 NC_004684.1 + 61338 0.67 0.446313
Target:  5'- cGCGGCguggUUggucAGCuGGGCCGCGaGGCGc -3'
miRNA:   3'- aUGCCGa---GAa---UCG-CCCGGCGUgUCGC- -5'
19209 3' -59.5 NC_004684.1 + 24501 0.67 0.475351
Target:  5'- gGCGGUgcc--GCaGGGCCGCGCguucGGCGg -3'
miRNA:   3'- aUGCCGagaauCG-CCCGGCGUG----UCGC- -5'
19209 3' -59.5 NC_004684.1 + 23000 0.67 0.475351
Target:  5'- aACGGC-CUgGGCcgacuGGCCGCcgucgGCAGCGa -3'
miRNA:   3'- aUGCCGaGAaUCGc----CCGGCG-----UGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 40711 0.67 0.465565
Target:  5'- gGCGGCgg-UGGcCGGGacgaccaGCGCGGCGg -3'
miRNA:   3'- aUGCCGagaAUC-GCCCgg-----CGUGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 40360 0.67 0.465565
Target:  5'- gGCGGC-CUUGGCcuuggGGGCCu--CGGCGg -3'
miRNA:   3'- aUGCCGaGAAUCG-----CCCGGcguGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 45834 0.67 0.455885
Target:  5'- gACGGC-CUcGGCGGucauGCCGCGCucguugauGGCGu -3'
miRNA:   3'- aUGCCGaGAaUCGCC----CGGCGUG--------UCGC- -5'
19209 3' -59.5 NC_004684.1 + 42187 0.67 0.427514
Target:  5'- cGCGGUgagcAGUGGGCCGUGgAGCu -3'
miRNA:   3'- aUGCCGagaaUCGCCCGGCGUgUCGc -5'
19209 3' -59.5 NC_004684.1 + 10110 0.67 0.447265
Target:  5'- gUGCGGCUCgccgUcacaggccgagcuguGCGGGCCG-ACGGUGc -3'
miRNA:   3'- -AUGCCGAGa---Au--------------CGCCCGGCgUGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 58620 0.66 0.536033
Target:  5'- gACGGCcCgUGGCGGcugguGCCGCGCugGGCc -3'
miRNA:   3'- aUGCCGaGaAUCGCC-----CGGCGUG--UCGc -5'
19209 3' -59.5 NC_004684.1 + 43270 0.66 0.505301
Target:  5'- gUACGGCUgCUgcgucGGCGuGCCGgGCuGCGg -3'
miRNA:   3'- -AUGCCGA-GAa----UCGCcCGGCgUGuCGC- -5'
19209 3' -59.5 NC_004684.1 + 54307 0.66 0.492219
Target:  5'- -uCGGCcccCUUGGCggcugacauuccgaGGGCauaGCACAGCGc -3'
miRNA:   3'- auGCCGa--GAAUCG--------------CCCGg--CGUGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 9466 0.66 0.536033
Target:  5'- --gGGCgCUggagcUGGCGGGCaaGCGCAGCc -3'
miRNA:   3'- augCCGaGA-----AUCGCCCGg-CGUGUCGc -5'
19209 3' -59.5 NC_004684.1 + 46305 0.66 0.525711
Target:  5'- uUGCGGCgCUUGGCGuGC-GC-CAGCGu -3'
miRNA:   3'- -AUGCCGaGAAUCGCcCGgCGuGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 1400 0.66 0.525711
Target:  5'- gGCGGCUaccggUA-CGGGCgGCugAGCc -3'
miRNA:   3'- aUGCCGAga---AUcGCCCGgCGugUCGc -5'
19209 3' -59.5 NC_004684.1 + 41432 0.66 0.515465
Target:  5'- gGCGGUggugcGGCGGuGCCGC-CGGUGu -3'
miRNA:   3'- aUGCCGagaa-UCGCC-CGGCGuGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 22356 0.66 0.515465
Target:  5'- gGCGGCggc-GGCGgcGGUCGCGCuGGCGg -3'
miRNA:   3'- aUGCCGagaaUCGC--CCGGCGUG-UCGC- -5'
19209 3' -59.5 NC_004684.1 + 49168 0.66 0.505301
Target:  5'- gUACGGCgcagUCUcGGCGgcGGCgGCGgCGGCGg -3'
miRNA:   3'- -AUGCCG----AGAaUCGC--CCGgCGU-GUCGC- -5'
19209 3' -59.5 NC_004684.1 + 47944 0.66 0.505301
Target:  5'- --aGGC-CUUGGUGGcGUCGgCACGGCu -3'
miRNA:   3'- augCCGaGAAUCGCC-CGGC-GUGUCGc -5'
19209 3' -59.5 NC_004684.1 + 5859 0.66 0.495224
Target:  5'- gGCGuGCgacUGGCaGGCCGgGCAGCa -3'
miRNA:   3'- aUGC-CGagaAUCGcCCGGCgUGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.