Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 19209 | 3' | -59.5 | NC_004684.1 | + | 60046 | 0.68 | 0.409191 |
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Target: 5'- cACGGCgcgCaccGGCGGGuuGCACAcCGa -3' miRNA: 3'- aUGCCGa--Gaa-UCGCCCggCGUGUcGC- -5' |
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| 19209 | 3' | -59.5 | NC_004684.1 | + | 61338 | 0.67 | 0.446313 |
|
Target: 5'- cGCGGCguggUUggucAGCuGGGCCGCGaGGCGc -3' miRNA: 3'- aUGCCGa---GAa---UCG-CCCGGCGUgUCGC- -5' |
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| 19209 | 3' | -59.5 | NC_004684.1 | + | 63154 | 0.74 | 0.164315 |
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Target: 5'- gUGCGGCUCcu-GCGcGCCGCGCAGgCGc -3' miRNA: 3'- -AUGCCGAGaauCGCcCGGCGUGUC-GC- -5' |
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| 19209 | 3' | -59.5 | NC_004684.1 | + | 63228 | 0.66 | 0.485239 |
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Target: 5'- gGCGGCUCguugccgGGCGucGGCCcgaGCAGCu -3' miRNA: 3'- aUGCCGAGaa-----UCGC--CCGGcg-UGUCGc -5' |
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| 19209 | 3' | -59.5 | NC_004684.1 | + | 64931 | 0.66 | 0.495224 |
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Target: 5'- gUACGGCacgCcgAGCuGGCCGCccaGGCGg -3' miRNA: 3'- -AUGCCGa--GaaUCGcCCGGCGug-UCGC- -5' |
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| 19209 | 3' | -59.5 | NC_004684.1 | + | 66507 | 0.75 | 0.136234 |
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Target: 5'- gGCGGC-CUc-GCGGGCCGCcuuCAGCGc -3' miRNA: 3'- aUGCCGaGAauCGCCCGGCGu--GUCGC- -5' |
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| 19209 | 3' | -59.5 | NC_004684.1 | + | 66574 | 0.7 | 0.295529 |
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Target: 5'- -gUGGUguccauGCGGGCCGCcACGGCGa -3' miRNA: 3'- auGCCGagaau-CGCCCGGCG-UGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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