Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19209 | 3' | -59.5 | NC_004684.1 | + | 43270 | 0.66 | 0.505301 |
Target: 5'- gUACGGCUgCUgcgucGGCGuGCCGgGCuGCGg -3' miRNA: 3'- -AUGCCGA-GAa----UCGCcCGGCgUGuCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 42551 | 0.68 | 0.418291 |
Target: 5'- gACGGCguucggCUUcGGCGuGGCCGCcaagaagacCAGCGa -3' miRNA: 3'- aUGCCGa-----GAA-UCGC-CCGGCGu--------GUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 42187 | 0.67 | 0.427514 |
Target: 5'- cGCGGUgagcAGUGGGCCGUGgAGCu -3' miRNA: 3'- aUGCCGagaaUCGCCCGGCGUgUCGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 41432 | 0.66 | 0.515465 |
Target: 5'- gGCGGUggugcGGCGGuGCCGC-CGGUGu -3' miRNA: 3'- aUGCCGagaa-UCGCC-CGGCGuGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 40711 | 0.67 | 0.465565 |
Target: 5'- gGCGGCgg-UGGcCGGGacgaccaGCGCGGCGg -3' miRNA: 3'- aUGCCGagaAUC-GCCCgg-----CGUGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 40390 | 0.7 | 0.310149 |
Target: 5'- gGCGGC-CUUcGGCaGGCCGguCAGCc -3' miRNA: 3'- aUGCCGaGAA-UCGcCCGGCguGUCGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 40360 | 0.67 | 0.465565 |
Target: 5'- gGCGGC-CUUGGCcuuggGGGCCu--CGGCGg -3' miRNA: 3'- aUGCCGaGAAUCG-----CCCGGcguGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 39306 | 0.7 | 0.310149 |
Target: 5'- -cCGGU-----GCGGGUCGCGCGGCGg -3' miRNA: 3'- auGCCGagaauCGCCCGGCGUGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 37454 | 1.06 | 0.000716 |
Target: 5'- gUACGGCUCUUAGCGGGCCGCACAGCGc -3' miRNA: 3'- -AUGCCGAGAAUCGCCCGGCGUGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 33810 | 0.7 | 0.280762 |
Target: 5'- aGCGGUUCggcgucGGCGGGCgGUgugcccgGCGGCGg -3' miRNA: 3'- aUGCCGAGaa----UCGCCCGgCG-------UGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 33525 | 0.72 | 0.236365 |
Target: 5'- gGCGGCUau--GCgGGGUCGUACGGCa -3' miRNA: 3'- aUGCCGAgaauCG-CCCGGCGUGUCGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 31168 | 0.68 | 0.409191 |
Target: 5'- aGCGGuCUCggcGGUGGccacGCUGCGCAGCu -3' miRNA: 3'- aUGCC-GAGaa-UCGCC----CGGCGUGUCGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 28073 | 0.68 | 0.409191 |
Target: 5'- gGCGGUg--UGGcCGGGCCGC-CGcGCGa -3' miRNA: 3'- aUGCCGagaAUC-GCCCGGCGuGU-CGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 26455 | 0.66 | 0.485239 |
Target: 5'- gUACGGCggcacGCcuGGCCGCgACAGCGu -3' miRNA: 3'- -AUGCCGagaauCGc-CCGGCG-UGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 24537 | 0.71 | 0.274615 |
Target: 5'- cUACGGCgguguGcCGGGCCGCgAUAGCGu -3' miRNA: 3'- -AUGCCGagaauC-GCCCGGCG-UGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 24501 | 0.67 | 0.475351 |
Target: 5'- gGCGGUgcc--GCaGGGCCGCGCguucGGCGg -3' miRNA: 3'- aUGCCGagaauCG-CCCGGCGUG----UCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 23000 | 0.67 | 0.475351 |
Target: 5'- aACGGC-CUgGGCcgacuGGCCGCcgucgGCAGCGa -3' miRNA: 3'- aUGCCGaGAaUCGc----CCGGCG-----UGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 22621 | 0.66 | 0.536033 |
Target: 5'- uUACGGCgCUgugGGa-GGCCGCcgcCAGCGg -3' miRNA: 3'- -AUGCCGaGAa--UCgcCCGGCGu--GUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 22356 | 0.66 | 0.515465 |
Target: 5'- gGCGGCggc-GGCGgcGGUCGCGCuGGCGg -3' miRNA: 3'- aUGCCGagaaUCGC--CCGGCGUG-UCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 18416 | 0.68 | 0.418291 |
Target: 5'- gGCGGCcC--GGCGGG-CGCAcCGGCGg -3' miRNA: 3'- aUGCCGaGaaUCGCCCgGCGU-GUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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