Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19209 | 3' | -59.5 | NC_004684.1 | + | 26455 | 0.66 | 0.485239 |
Target: 5'- gUACGGCggcacGCcuGGCCGCgACAGCGu -3' miRNA: 3'- -AUGCCGagaauCGc-CCGGCG-UGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 24501 | 0.67 | 0.475351 |
Target: 5'- gGCGGUgcc--GCaGGGCCGCGCguucGGCGg -3' miRNA: 3'- aUGCCGagaauCG-CCCGGCGUG----UCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 23000 | 0.67 | 0.475351 |
Target: 5'- aACGGC-CUgGGCcgacuGGCCGCcgucgGCAGCGa -3' miRNA: 3'- aUGCCGaGAaUCGc----CCGGCG-----UGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 40711 | 0.67 | 0.465565 |
Target: 5'- gGCGGCgg-UGGcCGGGacgaccaGCGCGGCGg -3' miRNA: 3'- aUGCCGagaAUC-GCCCgg-----CGUGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 40360 | 0.67 | 0.465565 |
Target: 5'- gGCGGC-CUUGGCcuuggGGGCCu--CGGCGg -3' miRNA: 3'- aUGCCGaGAAUCG-----CCCGGcguGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 45834 | 0.67 | 0.455885 |
Target: 5'- gACGGC-CUcGGCGGucauGCCGCGCucguugauGGCGu -3' miRNA: 3'- aUGCCGaGAaUCGCC----CGGCGUG--------UCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 37454 | 1.06 | 0.000716 |
Target: 5'- gUACGGCUCUUAGCGGGCCGCACAGCGc -3' miRNA: 3'- -AUGCCGAGAAUCGCCCGGCGUGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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