Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19209 | 3' | -59.5 | NC_004684.1 | + | 51321 | 0.67 | 0.475351 |
Target: 5'- -uCGGCUCaccGGCGGGCCaCGCuuGCu -3' miRNA: 3'- auGCCGAGaa-UCGCCCGGcGUGu-CGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 40711 | 0.67 | 0.465565 |
Target: 5'- gGCGGCgg-UGGcCGGGacgaccaGCGCGGCGg -3' miRNA: 3'- aUGCCGagaAUC-GCCCgg-----CGUGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 40360 | 0.67 | 0.465565 |
Target: 5'- gGCGGC-CUUGGCcuuggGGGCCu--CGGCGg -3' miRNA: 3'- aUGCCGaGAAUCG-----CCCGGcguGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 45834 | 0.67 | 0.455885 |
Target: 5'- gACGGC-CUcGGCGGucauGCCGCGCucguugauGGCGu -3' miRNA: 3'- aUGCCGaGAaUCGCC----CGGCGUG--------UCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 10110 | 0.67 | 0.447265 |
Target: 5'- gUGCGGCUCgccgUcacaggccgagcuguGCGGGCCG-ACGGUGc -3' miRNA: 3'- -AUGCCGAGa---Au--------------CGCCCGGCgUGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 61338 | 0.67 | 0.446313 |
Target: 5'- cGCGGCguggUUggucAGCuGGGCCGCGaGGCGc -3' miRNA: 3'- aUGCCGa---GAa---UCG-CCCGGCGUgUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 8160 | 0.67 | 0.446313 |
Target: 5'- gUGCGGgUCU--GCGGGUcaCGCuCGGCGg -3' miRNA: 3'- -AUGCCgAGAauCGCCCG--GCGuGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 42187 | 0.67 | 0.427514 |
Target: 5'- cGCGGUgagcAGUGGGCCGUGgAGCu -3' miRNA: 3'- aUGCCGagaaUCGCCCGGCGUgUCGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 42551 | 0.68 | 0.418291 |
Target: 5'- gACGGCguucggCUUcGGCGuGGCCGCcaagaagacCAGCGa -3' miRNA: 3'- aUGCCGa-----GAA-UCGC-CCGGCGu--------GUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 18416 | 0.68 | 0.418291 |
Target: 5'- gGCGGCcC--GGCGGG-CGCAcCGGCGg -3' miRNA: 3'- aUGCCGaGaaUCGCCCgGCGU-GUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 31168 | 0.68 | 0.409191 |
Target: 5'- aGCGGuCUCggcGGUGGccacGCUGCGCAGCu -3' miRNA: 3'- aUGCC-GAGaa-UCGCC----CGGCGUGUCGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 60046 | 0.68 | 0.409191 |
Target: 5'- cACGGCgcgCaccGGCGGGuuGCACAcCGa -3' miRNA: 3'- aUGCCGa--Gaa-UCGCCCggCGUGUcGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 59132 | 0.68 | 0.409191 |
Target: 5'- cGCGGCgcacgUGGCGGGaCUGCAuguuguCGGCGc -3' miRNA: 3'- aUGCCGaga--AUCGCCC-GGCGU------GUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 28073 | 0.68 | 0.409191 |
Target: 5'- gGCGGUg--UGGcCGGGCCGC-CGcGCGa -3' miRNA: 3'- aUGCCGagaAUC-GCCCGGCGuGU-CGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 43804 | 0.68 | 0.391365 |
Target: 5'- uUACGGU----GGUGGcGCgCGCGCAGCGa -3' miRNA: 3'- -AUGCCGagaaUCGCC-CG-GCGUGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 40390 | 0.7 | 0.310149 |
Target: 5'- gGCGGC-CUUcGGCaGGCCGguCAGCc -3' miRNA: 3'- aUGCCGaGAA-UCGcCCGGCguGUCGc -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 39306 | 0.7 | 0.310149 |
Target: 5'- -cCGGU-----GCGGGUCGCGCGGCGg -3' miRNA: 3'- auGCCGagaauCGCCCGGCGUGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 10809 | 0.7 | 0.310149 |
Target: 5'- aGCGGCaUCcggcGGCuGGGCCGCACcgAGUGa -3' miRNA: 3'- aUGCCG-AGaa--UCG-CCCGGCGUG--UCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 66574 | 0.7 | 0.295529 |
Target: 5'- -gUGGUguccauGCGGGCCGCcACGGCGa -3' miRNA: 3'- auGCCGagaau-CGCCCGGCG-UGUCGC- -5' |
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19209 | 3' | -59.5 | NC_004684.1 | + | 12058 | 0.7 | 0.285618 |
Target: 5'- gGCGGCUCgccuggccgccgAGCGcgacgaggugcuGGcCCGCGCGGCGg -3' miRNA: 3'- aUGCCGAGaa----------UCGC------------CC-GGCGUGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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