Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 19209 | 5' | -57.5 | NC_004684.1 | + | 57621 | 0.77 | 0.150339 |
|
Target: 5'- -gCG-GUACGGCCaGCCACCCGGUg- -3' miRNA: 3'- gaGCaCAUGCUGGgCGGUGGGCCAau -5' |
|||||||
| 19209 | 5' | -57.5 | NC_004684.1 | + | 60059 | 0.7 | 0.442256 |
|
Target: 5'- aCUCGUGgcgcGCGGCCCGgCgGCCCGu--- -3' miRNA: 3'- -GAGCACa---UGCUGGGC-GgUGGGCcaau -5' |
|||||||
| 19209 | 5' | -57.5 | NC_004684.1 | + | 61490 | 0.77 | 0.154403 |
|
Target: 5'- gUCGUGcGCGAUcagcgccgCCGCCACCCGGUc- -3' miRNA: 3'- gAGCACaUGCUG--------GGCGGUGGGCCAau -5' |
|||||||
| 19209 | 5' | -57.5 | NC_004684.1 | + | 61920 | 0.66 | 0.626258 |
|
Target: 5'- aUCGcgggGUGCGggccacggcACCCGCCggGCCUGGUg- -3' miRNA: 3'- gAGCa---CAUGC---------UGGGCGG--UGGGCCAau -5' |
|||||||
| 19209 | 5' | -57.5 | NC_004684.1 | + | 66457 | 0.69 | 0.500855 |
|
Target: 5'- --gGUG-GCGGCguugucuccacgCCGCCACCCGGUg- -3' miRNA: 3'- gagCACaUGCUG------------GGCGGUGGGCCAau -5' |
|||||||
| 19209 | 5' | -57.5 | NC_004684.1 | + | 66656 | 0.66 | 0.626258 |
|
Target: 5'- cCUCGgcgGCGGCCCgGUCACCggCGGUg- -3' miRNA: 3'- -GAGCacaUGCUGGG-CGGUGG--GCCAau -5' |
|||||||
| 19209 | 5' | -57.5 | NC_004684.1 | + | 66845 | 0.67 | 0.615592 |
|
Target: 5'- cCUCGgugGCGGCCuCGaCCGCCUGGc-- -3' miRNA: 3'- -GAGCacaUGCUGG-GC-GGUGGGCCaau -5' |
|||||||
| 19209 | 5' | -57.5 | NC_004684.1 | + | 66910 | 0.66 | 0.668882 |
|
Target: 5'- gUCG-GUGCugccGACCuCGCUgGCCCGGUUGu -3' miRNA: 3'- gAGCaCAUG----CUGG-GCGG-UGGGCCAAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home