Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19209 | 5' | -57.5 | NC_004684.1 | + | 60059 | 0.7 | 0.442256 |
Target: 5'- aCUCGUGgcgcGCGGCCCGgCgGCCCGu--- -3' miRNA: 3'- -GAGCACa---UGCUGGGC-GgUGGGCcaau -5' |
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19209 | 5' | -57.5 | NC_004684.1 | + | 28404 | 0.69 | 0.471093 |
Target: 5'- -aCGcGUACGugCCGCCgguugACCUGGUg- -3' miRNA: 3'- gaGCaCAUGCugGGCGG-----UGGGCCAau -5' |
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19209 | 5' | -57.5 | NC_004684.1 | + | 37543 | 0.69 | 0.471093 |
Target: 5'- -gCGgcgAUGACCCGCCgguggACCCGGUg- -3' miRNA: 3'- gaGCacaUGCUGGGCGG-----UGGGCCAau -5' |
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19209 | 5' | -57.5 | NC_004684.1 | + | 66457 | 0.69 | 0.500855 |
Target: 5'- --gGUG-GCGGCguugucuccacgCCGCCACCCGGUg- -3' miRNA: 3'- gagCACaUGCUG------------GGCGGUGGGCCAau -5' |
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19209 | 5' | -57.5 | NC_004684.1 | + | 2049 | 0.68 | 0.51096 |
Target: 5'- uUCGUGgacUACGGCCagCGCCACgUGGUg- -3' miRNA: 3'- gAGCAC---AUGCUGG--GCGGUGgGCCAau -5' |
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19209 | 5' | -57.5 | NC_004684.1 | + | 28774 | 0.68 | 0.541755 |
Target: 5'- gCUCcagGUcaGCGGCauGCCACCCGGUUc -3' miRNA: 3'- -GAGca-CA--UGCUGggCGGUGGGCCAAu -5' |
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19209 | 5' | -57.5 | NC_004684.1 | + | 4574 | 0.68 | 0.551117 |
Target: 5'- aUCGag-GCGcugcugcACUCGCCACCCGGUg- -3' miRNA: 3'- gAGCacaUGC-------UGGGCGGUGGGCCAau -5' |
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19209 | 5' | -57.5 | NC_004684.1 | + | 37493 | 1.06 | 0.001282 |
Target: 5'- cCUCGUGUACGACCCGCCACCCGGUUAc -3' miRNA: 3'- -GAGCACAUGCUGGGCGGUGGGCCAAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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