miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1921 3' -50.1 NC_001347.2 + 77873 0.66 0.999182
Target:  5'- gGCCgaGCGCCUGggcgccgUGCGcGUAGCCAa-- -3'
miRNA:   3'- -CGG--UGUGGGUa------AUGCaCAUCGGUaua -5'
1921 3' -50.1 NC_001347.2 + 39528 0.66 0.999001
Target:  5'- gGCgACAUgCCGUUGCGcugGGCCAUGg -3'
miRNA:   3'- -CGgUGUG-GGUAAUGCacaUCGGUAUa -5'
1921 3' -50.1 NC_001347.2 + 79185 0.66 0.998239
Target:  5'- aGCgGCgcgGCCCAgaGCGUGUcGGCCGa-- -3'
miRNA:   3'- -CGgUG---UGGGUaaUGCACA-UCGGUaua -5'
1921 3' -50.1 NC_001347.2 + 76383 0.67 0.997895
Target:  5'- uGCgCACGCUCuuguuUUGCGUGUaguGGUCGUAg -3'
miRNA:   3'- -CG-GUGUGGGu----AAUGCACA---UCGGUAUa -5'
1921 3' -50.1 NC_001347.2 + 8378 0.67 0.997036
Target:  5'- uGCCGCGCCCAaaaUUcacGCGUaaagcGUuGCCGUAg -3'
miRNA:   3'- -CGGUGUGGGU---AA---UGCA-----CAuCGGUAUa -5'
1921 3' -50.1 NC_001347.2 + 211070 0.67 0.996509
Target:  5'- aCCGCuaaaACCCAgaggGCGUGUguAGCCAc-- -3'
miRNA:   3'- cGGUG----UGGGUaa--UGCACA--UCGGUaua -5'
1921 3' -50.1 NC_001347.2 + 146380 0.68 0.994446
Target:  5'- cCCACaguACCCGUUACGUGacGGUCAa-- -3'
miRNA:   3'- cGGUG---UGGGUAAUGCACa-UCGGUaua -5'
1921 3' -50.1 NC_001347.2 + 26855 0.69 0.988918
Target:  5'- uGCuCACGCCCGUg--GUGUGGUCGg-- -3'
miRNA:   3'- -CG-GUGUGGGUAaugCACAUCGGUaua -5'
1921 3' -50.1 NC_001347.2 + 156666 0.69 0.985773
Target:  5'- cGCCGcCACCCAUgGCGgcgGGUCGUGg -3'
miRNA:   3'- -CGGU-GUGGGUAaUGCacaUCGGUAUa -5'
1921 3' -50.1 NC_001347.2 + 10791 0.69 0.985773
Target:  5'- aCCGCACCauacgguugUACGUGUAcGCCAUc- -3'
miRNA:   3'- cGGUGUGGgua------AUGCACAU-CGGUAua -5'
1921 3' -50.1 NC_001347.2 + 128330 0.7 0.972214
Target:  5'- cGUCGuCACCC---GCGUGUGGCCGc-- -3'
miRNA:   3'- -CGGU-GUGGGuaaUGCACAUCGGUaua -5'
1921 3' -50.1 NC_001347.2 + 192365 0.72 0.937425
Target:  5'- cGUCAgACCCAggGCGcaUGUAGCCGa-- -3'
miRNA:   3'- -CGGUgUGGGUaaUGC--ACAUCGGUaua -5'
1921 3' -50.1 NC_001347.2 + 64301 0.74 0.889813
Target:  5'- uCC-CGCCCAggACcuGUGUAGCCAUAa -3'
miRNA:   3'- cGGuGUGGGUaaUG--CACAUCGGUAUa -5'
1921 3' -50.1 NC_001347.2 + 158972 0.74 0.882757
Target:  5'- aGCUGgACCUGUUGCGcaugGUAGCCGUGUc -3'
miRNA:   3'- -CGGUgUGGGUAAUGCa---CAUCGGUAUA- -5'
1921 3' -50.1 NC_001347.2 + 36240 0.81 0.535627
Target:  5'- aGCCACgaguACCCAUUACGUGU-GUCAUGUc -3'
miRNA:   3'- -CGGUG----UGGGUAAUGCACAuCGGUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.