Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1921 | 3' | -50.1 | NC_001347.2 | + | 36240 | 0.81 | 0.535627 |
Target: 5'- aGCCACgaguACCCAUUACGUGU-GUCAUGUc -3' miRNA: 3'- -CGGUG----UGGGUAAUGCACAuCGGUAUA- -5' |
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1921 | 3' | -50.1 | NC_001347.2 | + | 158972 | 0.74 | 0.882757 |
Target: 5'- aGCUGgACCUGUUGCGcaugGUAGCCGUGUc -3' miRNA: 3'- -CGGUgUGGGUAAUGCa---CAUCGGUAUA- -5' |
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1921 | 3' | -50.1 | NC_001347.2 | + | 64301 | 0.74 | 0.889813 |
Target: 5'- uCC-CGCCCAggACcuGUGUAGCCAUAa -3' miRNA: 3'- cGGuGUGGGUaaUG--CACAUCGGUAUa -5' |
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1921 | 3' | -50.1 | NC_001347.2 | + | 192365 | 0.72 | 0.937425 |
Target: 5'- cGUCAgACCCAggGCGcaUGUAGCCGa-- -3' miRNA: 3'- -CGGUgUGGGUaaUGC--ACAUCGGUaua -5' |
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1921 | 3' | -50.1 | NC_001347.2 | + | 128330 | 0.7 | 0.972214 |
Target: 5'- cGUCGuCACCC---GCGUGUGGCCGc-- -3' miRNA: 3'- -CGGU-GUGGGuaaUGCACAUCGGUaua -5' |
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1921 | 3' | -50.1 | NC_001347.2 | + | 156666 | 0.69 | 0.985773 |
Target: 5'- cGCCGcCACCCAUgGCGgcgGGUCGUGg -3' miRNA: 3'- -CGGU-GUGGGUAaUGCacaUCGGUAUa -5' |
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1921 | 3' | -50.1 | NC_001347.2 | + | 10791 | 0.69 | 0.985773 |
Target: 5'- aCCGCACCauacgguugUACGUGUAcGCCAUc- -3' miRNA: 3'- cGGUGUGGgua------AUGCACAU-CGGUAua -5' |
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1921 | 3' | -50.1 | NC_001347.2 | + | 26855 | 0.69 | 0.988918 |
Target: 5'- uGCuCACGCCCGUg--GUGUGGUCGg-- -3' miRNA: 3'- -CG-GUGUGGGUAaugCACAUCGGUaua -5' |
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1921 | 3' | -50.1 | NC_001347.2 | + | 146380 | 0.68 | 0.994446 |
Target: 5'- cCCACaguACCCGUUACGUGacGGUCAa-- -3' miRNA: 3'- cGGUG---UGGGUAAUGCACa-UCGGUaua -5' |
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1921 | 3' | -50.1 | NC_001347.2 | + | 211070 | 0.67 | 0.996509 |
Target: 5'- aCCGCuaaaACCCAgaggGCGUGUguAGCCAc-- -3' miRNA: 3'- cGGUG----UGGGUaa--UGCACA--UCGGUaua -5' |
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1921 | 3' | -50.1 | NC_001347.2 | + | 8378 | 0.67 | 0.997036 |
Target: 5'- uGCCGCGCCCAaaaUUcacGCGUaaagcGUuGCCGUAg -3' miRNA: 3'- -CGGUGUGGGU---AA---UGCA-----CAuCGGUAUa -5' |
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1921 | 3' | -50.1 | NC_001347.2 | + | 76383 | 0.67 | 0.997895 |
Target: 5'- uGCgCACGCUCuuguuUUGCGUGUaguGGUCGUAg -3' miRNA: 3'- -CG-GUGUGGGu----AAUGCACA---UCGGUAUa -5' |
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1921 | 3' | -50.1 | NC_001347.2 | + | 79185 | 0.66 | 0.998239 |
Target: 5'- aGCgGCgcgGCCCAgaGCGUGUcGGCCGa-- -3' miRNA: 3'- -CGgUG---UGGGUaaUGCACA-UCGGUaua -5' |
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1921 | 3' | -50.1 | NC_001347.2 | + | 39528 | 0.66 | 0.999001 |
Target: 5'- gGCgACAUgCCGUUGCGcugGGCCAUGg -3' miRNA: 3'- -CGgUGUG-GGUAAUGCacaUCGGUAUa -5' |
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1921 | 3' | -50.1 | NC_001347.2 | + | 77873 | 0.66 | 0.999182 |
Target: 5'- gGCCgaGCGCCUGggcgccgUGCGcGUAGCCAa-- -3' miRNA: 3'- -CGG--UGUGGGUa------AUGCaCAUCGGUaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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