miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1921 5' -52.6 NC_001347.2 + 107649 0.68 0.975968
Target:  5'- ---cACGGgaCGCGCUCCUGGG-GCGCc -3'
miRNA:   3'- cauaUGUCg-GUGUGGGGAUCCaUGCG- -5'
1921 5' -52.6 NC_001347.2 + 181217 0.69 0.964403
Target:  5'- cGUcUACGGCUACgACCCCgccauGG-ACGCc -3'
miRNA:   3'- -CAuAUGUCGGUG-UGGGGau---CCaUGCG- -5'
1921 5' -52.6 NC_001347.2 + 150157 0.69 0.957356
Target:  5'- -aAUGCcgagGGCCGCGCCC--AGGUAgGCc -3'
miRNA:   3'- caUAUG----UCGGUGUGGGgaUCCAUgCG- -5'
1921 5' -52.6 NC_001347.2 + 149055 0.71 0.888855
Target:  5'- -aGUACAGCgACACCgaUAGGcUGCGUg -3'
miRNA:   3'- caUAUGUCGgUGUGGggAUCC-AUGCG- -5'
1921 5' -52.6 NC_001347.2 + 39798 0.71 0.901991
Target:  5'- ---cACAGCCGC-CUCCcGGGcGCGCa -3'
miRNA:   3'- cauaUGUCGGUGuGGGGaUCCaUGCG- -5'
1921 5' -52.6 NC_001347.2 + 124459 0.71 0.908211
Target:  5'- gGUGgGCAGUCAC-CCCCUAGG-ACa- -3'
miRNA:   3'- -CAUaUGUCGGUGuGGGGAUCCaUGcg -5'
1921 5' -52.6 NC_001347.2 + 125316 0.71 0.914195
Target:  5'- ---cGCAGCCGCGCCggCCUcgAGcauGUACGCg -3'
miRNA:   3'- cauaUGUCGGUGUGG--GGA--UC---CAUGCG- -5'
1921 5' -52.6 NC_001347.2 + 623 0.72 0.859902
Target:  5'- ---gGCGGCUguGCGCUCCaguGGUACGCg -3'
miRNA:   3'- cauaUGUCGG--UGUGGGGau-CCAUGCG- -5'
1921 5' -52.6 NC_001347.2 + 38810 0.73 0.836009
Target:  5'- -gGUACAGCCGCACCaCCUcGcccGCGCc -3'
miRNA:   3'- caUAUGUCGGUGUGG-GGAuCca-UGCG- -5'
1921 5' -52.6 NC_001347.2 + 53736 0.73 0.827664
Target:  5'- ---cACAGCCGCGUgCCgcGGGUGCGCg -3'
miRNA:   3'- cauaUGUCGGUGUGgGGa-UCCAUGCG- -5'
1921 5' -52.6 NC_001347.2 + 136307 0.73 0.819141
Target:  5'- ---cGgGGCuCGCGCuCCCUAGGUGCGg -3'
miRNA:   3'- cauaUgUCG-GUGUG-GGGAUCCAUGCg -5'
1921 5' -52.6 NC_001347.2 + 77891 0.74 0.78343
Target:  5'- -cGUGCgcguAGCCaACGCgCCCgAGGUACGCg -3'
miRNA:   3'- caUAUG----UCGG-UGUG-GGGaUCCAUGCG- -5'
1921 5' -52.6 NC_001347.2 + 94990 0.76 0.675773
Target:  5'- ---cGCAGCCGCugCCCagaucacacAGGUGCGUg -3'
miRNA:   3'- cauaUGUCGGUGugGGGa--------UCCAUGCG- -5'
1921 5' -52.6 NC_001347.2 + 104632 0.77 0.624675
Target:  5'- ---cGCGGCCACacacaACCCCUGGGccuCGCa -3'
miRNA:   3'- cauaUGUCGGUG-----UGGGGAUCCau-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.