Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 104632 | 0.77 | 0.624675 |
Target: 5'- ---cGCGGCCACacacaACCCCUGGGccuCGCa -3' miRNA: 3'- cauaUGUCGGUG-----UGGGGAUCCau-GCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 94990 | 0.76 | 0.675773 |
Target: 5'- ---cGCAGCCGCugCCCagaucacacAGGUGCGUg -3' miRNA: 3'- cauaUGUCGGUGugGGGa--------UCCAUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 77891 | 0.74 | 0.78343 |
Target: 5'- -cGUGCgcguAGCCaACGCgCCCgAGGUACGCg -3' miRNA: 3'- caUAUG----UCGG-UGUG-GGGaUCCAUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 136307 | 0.73 | 0.819141 |
Target: 5'- ---cGgGGCuCGCGCuCCCUAGGUGCGg -3' miRNA: 3'- cauaUgUCG-GUGUG-GGGAUCCAUGCg -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 53736 | 0.73 | 0.827664 |
Target: 5'- ---cACAGCCGCGUgCCgcGGGUGCGCg -3' miRNA: 3'- cauaUGUCGGUGUGgGGa-UCCAUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 38810 | 0.73 | 0.836009 |
Target: 5'- -gGUACAGCCGCACCaCCUcGcccGCGCc -3' miRNA: 3'- caUAUGUCGGUGUGG-GGAuCca-UGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 623 | 0.72 | 0.859902 |
Target: 5'- ---gGCGGCUguGCGCUCCaguGGUACGCg -3' miRNA: 3'- cauaUGUCGG--UGUGGGGau-CCAUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 39798 | 0.71 | 0.901991 |
Target: 5'- ---cACAGCCGC-CUCCcGGGcGCGCa -3' miRNA: 3'- cauaUGUCGGUGuGGGGaUCCaUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 125316 | 0.71 | 0.914195 |
Target: 5'- ---cGCAGCCGCGCCggCCUcgAGcauGUACGCg -3' miRNA: 3'- cauaUGUCGGUGUGG--GGA--UC---CAUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 124459 | 0.71 | 0.908211 |
Target: 5'- gGUGgGCAGUCAC-CCCCUAGG-ACa- -3' miRNA: 3'- -CAUaUGUCGGUGuGGGGAUCCaUGcg -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 149055 | 0.71 | 0.888855 |
Target: 5'- -aGUACAGCgACACCgaUAGGcUGCGUg -3' miRNA: 3'- caUAUGUCGgUGUGGggAUCC-AUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 150157 | 0.69 | 0.957356 |
Target: 5'- -aAUGCcgagGGCCGCGCCC--AGGUAgGCc -3' miRNA: 3'- caUAUG----UCGGUGUGGGgaUCCAUgCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 181217 | 0.69 | 0.964403 |
Target: 5'- cGUcUACGGCUACgACCCCgccauGG-ACGCc -3' miRNA: 3'- -CAuAUGUCGGUG-UGGGGau---CCaUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 107415 | 0.68 | 0.967602 |
Target: 5'- uUGUACcGCCACGCUCCg----GCGCg -3' miRNA: 3'- cAUAUGuCGGUGUGGGGauccaUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 40166 | 0.68 | 0.973378 |
Target: 5'- --cUGCgaAGCCGCACaCCCcgAGGccGCGCa -3' miRNA: 3'- cauAUG--UCGGUGUG-GGGa-UCCa-UGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 107649 | 0.68 | 0.975968 |
Target: 5'- ---cACGGgaCGCGCUCCUGGG-GCGCc -3' miRNA: 3'- cauaUGUCg-GUGUGGGGAUCCaUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 22882 | 0.68 | 0.973378 |
Target: 5'- ---aGCGGCCACG--UCUGGGUGCaGCa -3' miRNA: 3'- cauaUGUCGGUGUggGGAUCCAUG-CG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 92981 | 0.67 | 0.984509 |
Target: 5'- -cGUACAGCaCGCACaCCUcGGgcUGCg -3' miRNA: 3'- caUAUGUCG-GUGUGgGGAuCCauGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 8318 | 0.67 | 0.982435 |
Target: 5'- cUGUGCGGCCAUcgugcaguuccaaGCgCCgagggUAGGUGCGUu -3' miRNA: 3'- cAUAUGUCGGUG-------------UGgGG-----AUCCAUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 1840 | 0.67 | 0.987798 |
Target: 5'- cGUcgGC-GCCGCACCCCgc-GU-CGCu -3' miRNA: 3'- -CAuaUGuCGGUGUGGGGaucCAuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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