miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1921 5' -52.6 NC_001347.2 + 107649 0.68 0.975968
Target:  5'- ---cACGGgaCGCGCUCCUGGG-GCGCc -3'
miRNA:   3'- cauaUGUCg-GUGUGGGGAUCCaUGCG- -5'
1921 5' -52.6 NC_001347.2 + 124459 0.71 0.908211
Target:  5'- gGUGgGCAGUCAC-CCCCUAGG-ACa- -3'
miRNA:   3'- -CAUaUGUCGGUGuGGGGAUCCaUGcg -5'
1921 5' -52.6 NC_001347.2 + 125316 0.71 0.914195
Target:  5'- ---cGCAGCCGCGCCggCCUcgAGcauGUACGCg -3'
miRNA:   3'- cauaUGUCGGUGUGG--GGA--UC---CAUGCG- -5'
1921 5' -52.6 NC_001347.2 + 128562 0.66 0.992738
Target:  5'- ---cACAGCUACGCgCUCUGGGccaGCc -3'
miRNA:   3'- cauaUGUCGGUGUG-GGGAUCCaugCG- -5'
1921 5' -52.6 NC_001347.2 + 136307 0.73 0.819141
Target:  5'- ---cGgGGCuCGCGCuCCCUAGGUGCGg -3'
miRNA:   3'- cauaUgUCG-GUGUG-GGGAUCCAUGCg -5'
1921 5' -52.6 NC_001347.2 + 138189 0.66 0.993681
Target:  5'- ---cACAGgUuugGCGCCCgUAGGcGCGCg -3'
miRNA:   3'- cauaUGUCgG---UGUGGGgAUCCaUGCG- -5'
1921 5' -52.6 NC_001347.2 + 140364 0.66 0.993409
Target:  5'- -gGUACuuguuGCCACACguguuaucagacggCCUUcgugcGGGUGCGCa -3'
miRNA:   3'- caUAUGu----CGGUGUG--------------GGGA-----UCCAUGCG- -5'
1921 5' -52.6 NC_001347.2 + 149055 0.71 0.888855
Target:  5'- -aGUACAGCgACACCgaUAGGcUGCGUg -3'
miRNA:   3'- caUAUGUCGgUGUGGggAUCC-AUGCG- -5'
1921 5' -52.6 NC_001347.2 + 150157 0.69 0.957356
Target:  5'- -aAUGCcgagGGCCGCGCCC--AGGUAgGCc -3'
miRNA:   3'- caUAUG----UCGGUGUGGGgaUCCAUgCG- -5'
1921 5' -52.6 NC_001347.2 + 156487 0.65 0.99428
Target:  5'- cGUAaGCAGUCACAgcggcagcgguccgUCCCUGuGGcGCGCc -3'
miRNA:   3'- -CAUaUGUCGGUGU--------------GGGGAU-CCaUGCG- -5'
1921 5' -52.6 NC_001347.2 + 158711 0.66 0.993681
Target:  5'- cGUcgGCGGCCACAUUgUgcagcAGGcGCGCg -3'
miRNA:   3'- -CAuaUGUCGGUGUGGgGa----UCCaUGCG- -5'
1921 5' -52.6 NC_001347.2 + 173975 0.67 0.987798
Target:  5'- ---cGCgGGCCGCGUgCCUGGGaACGCg -3'
miRNA:   3'- cauaUG-UCGGUGUGgGGAUCCaUGCG- -5'
1921 5' -52.6 NC_001347.2 + 181217 0.69 0.964403
Target:  5'- cGUcUACGGCUACgACCCCgccauGG-ACGCc -3'
miRNA:   3'- -CAuAUGUCGGUG-UGGGGau---CCaUGCG- -5'
1921 5' -52.6 NC_001347.2 + 215332 0.67 0.980587
Target:  5'- ---gGCAGCucggCACGCCCCggGGcGUGCGg -3'
miRNA:   3'- cauaUGUCG----GUGUGGGGa-UC-CAUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.