Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 77891 | 0.74 | 0.78343 |
Target: 5'- -cGUGCgcguAGCCaACGCgCCCgAGGUACGCg -3' miRNA: 3'- caUAUG----UCGG-UGUG-GGGaUCCAUGCG- -5' |
|||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 75993 | 0.66 | 0.990518 |
Target: 5'- gGUcgGcCAGCuCGCagaGCUCCU-GGUACGCg -3' miRNA: 3'- -CAuaU-GUCG-GUG---UGGGGAuCCAUGCG- -5' |
|||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 53736 | 0.73 | 0.827664 |
Target: 5'- ---cACAGCCGCGUgCCgcGGGUGCGCg -3' miRNA: 3'- cauaUGUCGGUGUGgGGa-UCCAUGCG- -5' |
|||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 40166 | 0.68 | 0.973378 |
Target: 5'- --cUGCgaAGCCGCACaCCCcgAGGccGCGCa -3' miRNA: 3'- cauAUG--UCGGUGUG-GGGa-UCCa-UGCG- -5' |
|||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 39798 | 0.71 | 0.901991 |
Target: 5'- ---cACAGCCGC-CUCCcGGGcGCGCa -3' miRNA: 3'- cauaUGUCGGUGuGGGGaUCCaUGCG- -5' |
|||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 38810 | 0.73 | 0.836009 |
Target: 5'- -gGUACAGCCGCACCaCCUcGcccGCGCc -3' miRNA: 3'- caUAUGUCGGUGUGG-GGAuCca-UGCG- -5' |
|||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 27122 | 0.66 | 0.993681 |
Target: 5'- --cUGCAGCUGCACCacggCCUuauguGGcUGCGCc -3' miRNA: 3'- cauAUGUCGGUGUGG----GGAu----CC-AUGCG- -5' |
|||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 24687 | 0.67 | 0.980587 |
Target: 5'- cGUGUGCcuGCCAggaGCCCCgcgAGGUguugACGUc -3' miRNA: 3'- -CAUAUGu-CGGUg--UGGGGa--UCCA----UGCG- -5' |
|||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 22882 | 0.68 | 0.973378 |
Target: 5'- ---aGCGGCCACG--UCUGGGUGCaGCa -3' miRNA: 3'- cauaUGUCGGUGUggGGAUCCAUG-CG- -5' |
|||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 8318 | 0.67 | 0.982435 |
Target: 5'- cUGUGCGGCCAUcgugcaguuccaaGCgCCgagggUAGGUGCGUu -3' miRNA: 3'- cAUAUGUCGGUG-------------UGgGG-----AUCCAUGCG- -5' |
|||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 3790 | 0.66 | 0.990518 |
Target: 5'- --cUACAGUCACACCCUucccaaUAGGaACa- -3' miRNA: 3'- cauAUGUCGGUGUGGGG------AUCCaUGcg -5' |
|||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 2091 | 0.67 | 0.987798 |
Target: 5'- ---cGCAGCCguacgGCGCCgCCggcGGGgGCGCg -3' miRNA: 3'- cauaUGUCGG-----UGUGG-GGa--UCCaUGCG- -5' |
|||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 1840 | 0.67 | 0.987798 |
Target: 5'- cGUcgGC-GCCGCACCCCgc-GU-CGCu -3' miRNA: 3'- -CAuaUGuCGGUGUGGGGaucCAuGCG- -5' |
|||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 623 | 0.72 | 0.859902 |
Target: 5'- ---gGCGGCUguGCGCUCCaguGGUACGCg -3' miRNA: 3'- cauaUGUCGG--UGUGGGGau-CCAUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home