miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1921 5' -52.6 NC_001347.2 + 27122 0.66 0.993681
Target:  5'- --cUGCAGCUGCACCacggCCUuauguGGcUGCGCc -3'
miRNA:   3'- cauAUGUCGGUGUGG----GGAu----CC-AUGCG- -5'
1921 5' -52.6 NC_001347.2 + 100711 0.66 0.993681
Target:  5'- ---aACAGCgCGCACCCgUucgacguuaacGGGU-CGCg -3'
miRNA:   3'- cauaUGUCG-GUGUGGGgA-----------UCCAuGCG- -5'
1921 5' -52.6 NC_001347.2 + 140364 0.66 0.993409
Target:  5'- -gGUACuuguuGCCACACguguuaucagacggCCUUcgugcGGGUGCGCa -3'
miRNA:   3'- caUAUGu----CGGUGUG--------------GGGA-----UCCAUGCG- -5'
1921 5' -52.6 NC_001347.2 + 128562 0.66 0.992738
Target:  5'- ---cACAGCUACGCgCUCUGGGccaGCc -3'
miRNA:   3'- cauaUGUCGGUGUG-GGGAUCCaugCG- -5'
1921 5' -52.6 NC_001347.2 + 93240 0.66 0.992738
Target:  5'- ---aGCGGCgGCACCCCggcucagacgAGGcguuaGCGCc -3'
miRNA:   3'- cauaUGUCGgUGUGGGGa---------UCCa----UGCG- -5'
1921 5' -52.6 NC_001347.2 + 173975 0.67 0.987798
Target:  5'- ---cGCgGGCCGCGUgCCUGGGaACGCg -3'
miRNA:   3'- cauaUG-UCGGUGUGgGGAUCCaUGCG- -5'
1921 5' -52.6 NC_001347.2 + 3790 0.66 0.990518
Target:  5'- --cUACAGUCACACCCUucccaaUAGGaACa- -3'
miRNA:   3'- cauAUGUCGGUGUGGGG------AUCCaUGcg -5'
1921 5' -52.6 NC_001347.2 + 75993 0.66 0.990518
Target:  5'- gGUcgGcCAGCuCGCagaGCUCCU-GGUACGCg -3'
miRNA:   3'- -CAuaU-GUCG-GUG---UGGGGAuCCAUGCG- -5'
1921 5' -52.6 NC_001347.2 + 2091 0.67 0.987798
Target:  5'- ---cGCAGCCguacgGCGCCgCCggcGGGgGCGCg -3'
miRNA:   3'- cauaUGUCGG-----UGUGG-GGa--UCCaUGCG- -5'
1921 5' -52.6 NC_001347.2 + 1840 0.67 0.987798
Target:  5'- cGUcgGC-GCCGCACCCCgc-GU-CGCu -3'
miRNA:   3'- -CAuaUGuCGGUGUGGGGaucCAuGCG- -5'
1921 5' -52.6 NC_001347.2 + 8318 0.67 0.982435
Target:  5'- cUGUGCGGCCAUcgugcaguuccaaGCgCCgagggUAGGUGCGUu -3'
miRNA:   3'- cAUAUGUCGGUG-------------UGgGG-----AUCCAUGCG- -5'
1921 5' -52.6 NC_001347.2 + 92981 0.67 0.984509
Target:  5'- -cGUACAGCaCGCACaCCUcGGgcUGCg -3'
miRNA:   3'- caUAUGUCG-GUGUGgGGAuCCauGCG- -5'
1921 5' -52.6 NC_001347.2 + 215332 0.67 0.980587
Target:  5'- ---gGCAGCucggCACGCCCCggGGcGUGCGg -3'
miRNA:   3'- cauaUGUCG----GUGUGGGGa-UC-CAUGCg -5'
1921 5' -52.6 NC_001347.2 + 94990 0.76 0.675773
Target:  5'- ---cGCAGCCGCugCCCagaucacacAGGUGCGUg -3'
miRNA:   3'- cauaUGUCGGUGugGGGa--------UCCAUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.