Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1921 | 5' | -52.6 | NC_001347.2 | + | 27122 | 0.66 | 0.993681 |
Target: 5'- --cUGCAGCUGCACCacggCCUuauguGGcUGCGCc -3' miRNA: 3'- cauAUGUCGGUGUGG----GGAu----CC-AUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 100711 | 0.66 | 0.993681 |
Target: 5'- ---aACAGCgCGCACCCgUucgacguuaacGGGU-CGCg -3' miRNA: 3'- cauaUGUCG-GUGUGGGgA-----------UCCAuGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 140364 | 0.66 | 0.993409 |
Target: 5'- -gGUACuuguuGCCACACguguuaucagacggCCUUcgugcGGGUGCGCa -3' miRNA: 3'- caUAUGu----CGGUGUG--------------GGGA-----UCCAUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 128562 | 0.66 | 0.992738 |
Target: 5'- ---cACAGCUACGCgCUCUGGGccaGCc -3' miRNA: 3'- cauaUGUCGGUGUG-GGGAUCCaugCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 93240 | 0.66 | 0.992738 |
Target: 5'- ---aGCGGCgGCACCCCggcucagacgAGGcguuaGCGCc -3' miRNA: 3'- cauaUGUCGgUGUGGGGa---------UCCa----UGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 173975 | 0.67 | 0.987798 |
Target: 5'- ---cGCgGGCCGCGUgCCUGGGaACGCg -3' miRNA: 3'- cauaUG-UCGGUGUGgGGAUCCaUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 3790 | 0.66 | 0.990518 |
Target: 5'- --cUACAGUCACACCCUucccaaUAGGaACa- -3' miRNA: 3'- cauAUGUCGGUGUGGGG------AUCCaUGcg -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 75993 | 0.66 | 0.990518 |
Target: 5'- gGUcgGcCAGCuCGCagaGCUCCU-GGUACGCg -3' miRNA: 3'- -CAuaU-GUCG-GUG---UGGGGAuCCAUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 2091 | 0.67 | 0.987798 |
Target: 5'- ---cGCAGCCguacgGCGCCgCCggcGGGgGCGCg -3' miRNA: 3'- cauaUGUCGG-----UGUGG-GGa--UCCaUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 1840 | 0.67 | 0.987798 |
Target: 5'- cGUcgGC-GCCGCACCCCgc-GU-CGCu -3' miRNA: 3'- -CAuaUGuCGGUGUGGGGaucCAuGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 8318 | 0.67 | 0.982435 |
Target: 5'- cUGUGCGGCCAUcgugcaguuccaaGCgCCgagggUAGGUGCGUu -3' miRNA: 3'- cAUAUGUCGGUG-------------UGgGG-----AUCCAUGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 92981 | 0.67 | 0.984509 |
Target: 5'- -cGUACAGCaCGCACaCCUcGGgcUGCg -3' miRNA: 3'- caUAUGUCG-GUGUGgGGAuCCauGCG- -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 215332 | 0.67 | 0.980587 |
Target: 5'- ---gGCAGCucggCACGCCCCggGGcGUGCGg -3' miRNA: 3'- cauaUGUCG----GUGUGGGGa-UC-CAUGCg -5' |
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1921 | 5' | -52.6 | NC_001347.2 | + | 94990 | 0.76 | 0.675773 |
Target: 5'- ---cGCAGCCGCugCCCagaucacacAGGUGCGUg -3' miRNA: 3'- cauaUGUCGGUGugGGGa--------UCCAUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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