miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19210 3' -56.2 NC_004684.1 + 38793 0.66 0.734602
Target:  5'- aCAAgcuGGGCAuuuccagcGGCGGUG-CC-CGCCUg -3'
miRNA:   3'- aGUU---CCUGUu-------CCGCCACuGGuGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 55874 0.66 0.734602
Target:  5'- cCAAGGugGccgGGGCaugGACC-UGCCCg -3'
miRNA:   3'- aGUUCCugU---UCCGccaCUGGuGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 9705 0.66 0.733573
Target:  5'- aUCGAcGGCGAGGUGuccugauGUGGCCGCuaCCCg -3'
miRNA:   3'- -AGUUcCUGUUCCGC-------CACUGGUGc-GGG- -5'
19210 3' -56.2 NC_004684.1 + 20870 0.66 0.72427
Target:  5'- cCGAGGGCAAGGaCcGUG-CgGCGCUg -3'
miRNA:   3'- aGUUCCUGUUCC-GcCACuGgUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 37191 0.66 0.72427
Target:  5'- cCAuGGACucgccGGGUuuGGUGGCCACcaGCUCg -3'
miRNA:   3'- aGUuCCUGu----UCCG--CCACUGGUG--CGGG- -5'
19210 3' -56.2 NC_004684.1 + 57566 0.66 0.72427
Target:  5'- aUCGAcGGCAAGaCGGUGGCCuugaGCGUCg -3'
miRNA:   3'- -AGUUcCUGUUCcGCCACUGG----UGCGGg -5'
19210 3' -56.2 NC_004684.1 + 5848 0.66 0.72427
Target:  5'- uUCGAGGACcAGGCGuGcGACuggCAgGCCg -3'
miRNA:   3'- -AGUUCCUGuUCCGC-CaCUG---GUgCGGg -5'
19210 3' -56.2 NC_004684.1 + 1083 0.66 0.72427
Target:  5'- ---uGGACGugauCGGUGACCAgGCCg -3'
miRNA:   3'- aguuCCUGUucc-GCCACUGGUgCGGg -5'
19210 3' -56.2 NC_004684.1 + 18911 0.66 0.72427
Target:  5'- gCGGGGuCGcGGCGcaucaGACCAgGCCCu -3'
miRNA:   3'- aGUUCCuGUuCCGCca---CUGGUgCGGG- -5'
19210 3' -56.2 NC_004684.1 + 55930 0.66 0.72427
Target:  5'- cCAAGGugGaccgGGGCGa-GGCCgACGCCg -3'
miRNA:   3'- aGUUCCugU----UCCGCcaCUGG-UGCGGg -5'
19210 3' -56.2 NC_004684.1 + 56747 0.66 0.723232
Target:  5'- --cGGGAaccggcaccagacCAcGGUGGUGACgACGCCg -3'
miRNA:   3'- aguUCCU-------------GUuCCGCCACUGgUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 4143 0.66 0.71385
Target:  5'- gUCGuGGACAAGcuGCucgGGCCgACGCCCg -3'
miRNA:   3'- -AGUuCCUGUUC--CGccaCUGG-UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 8544 0.66 0.71385
Target:  5'- ---cGGACGAGGUGG--ACCuguGCGCCg -3'
miRNA:   3'- aguuCCUGUUCCGCCacUGG---UGCGGg -5'
19210 3' -56.2 NC_004684.1 + 24119 0.66 0.71385
Target:  5'- cCAAGGACGugguGcGCGGcgacaUGGCCGUGCUCu -3'
miRNA:   3'- aGUUCCUGUu---C-CGCC-----ACUGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 10569 0.66 0.71385
Target:  5'- --cAGGugGucGUGGUcgauGGCCACGUCCg -3'
miRNA:   3'- aguUCCugUucCGCCA----CUGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 32664 0.66 0.71385
Target:  5'- gCAAGG-CcuGGCGGcggcaUGGCUACGgCCu -3'
miRNA:   3'- aGUUCCuGuuCCGCC-----ACUGGUGCgGG- -5'
19210 3' -56.2 NC_004684.1 + 22444 0.66 0.71385
Target:  5'- cCGucGGCGcGGCGGcGAUCcCGCCCg -3'
miRNA:   3'- aGUucCUGUuCCGCCaCUGGuGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 29341 0.66 0.703354
Target:  5'- cCAAGcGCuggGAGGCGGUgGACC-UGUCCg -3'
miRNA:   3'- aGUUCcUG---UUCCGCCA-CUGGuGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 47032 0.66 0.703354
Target:  5'- gUCGGGGugGccuGcGCGGUGACgGUGCaCCg -3'
miRNA:   3'- -AGUUCCugUu--C-CGCCACUGgUGCG-GG- -5'
19210 3' -56.2 NC_004684.1 + 33898 0.66 0.703354
Target:  5'- gCGAGuACAGGGCcGccGCCGCGUCCa -3'
miRNA:   3'- aGUUCcUGUUCCGcCacUGGUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.