miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19210 5' -59.4 NC_004684.1 + 66662 0.66 0.493348
Target:  5'- cGGcGGCcCGGUCACCGGcggugCCCAGGu- -3'
miRNA:   3'- cUC-CCGcGCCAGUGGUCa----GGGUUCua -5'
19210 5' -59.4 NC_004684.1 + 17490 0.66 0.493348
Target:  5'- -uGGGCGCGaUCACCAuGUCCgGcGAc -3'
miRNA:   3'- cuCCCGCGCcAGUGGU-CAGGgUuCUa -5'
19210 5' -59.4 NC_004684.1 + 1802 0.67 0.454058
Target:  5'- aAGGGCGaGGUCGCCGGUgUCAu--- -3'
miRNA:   3'- cUCCCGCgCCAGUGGUCAgGGUucua -5'
19210 5' -59.4 NC_004684.1 + 53925 0.69 0.363945
Target:  5'- cGAGGuGCGgGGUCACCGuGUCggCCAGGc- -3'
miRNA:   3'- -CUCC-CGCgCCAGUGGU-CAG--GGUUCua -5'
19210 5' -59.4 NC_004684.1 + 57364 0.7 0.301293
Target:  5'- uGAGGGCggggucuuuugcGCGGUUACCAGUCgcuauCCAGGc- -3'
miRNA:   3'- -CUCCCG------------CGCCAGUGGUCAG-----GGUUCua -5'
19210 5' -59.4 NC_004684.1 + 29054 0.71 0.273227
Target:  5'- -uGGGCGUGGUCACCGccuuGUCCUu-GAg -3'
miRNA:   3'- cuCCCGCGCCAGUGGU----CAGGGuuCUa -5'
19210 5' -59.4 NC_004684.1 + 14210 0.74 0.167754
Target:  5'- cAGcGGCGCGGUCgGCCuGUCCCcGGAg -3'
miRNA:   3'- cUC-CCGCGCCAG-UGGuCAGGGuUCUa -5'
19210 5' -59.4 NC_004684.1 + 38368 1.05 0.000869
Target:  5'- cGAGGGCGCGGUCACCAGUCCCAAGAUc -3'
miRNA:   3'- -CUCCCGCGCCAGUGGUCAGGGUUCUA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.