miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19211 5' -52.7 NC_004684.1 + 36513 0.66 0.913309
Target:  5'- gACG-CUgagCCUGGGCacgGCGUUCGggaucagcgaguACCGGg -3'
miRNA:   3'- -UGUaGGa--GGACCUG---UGCAAGU------------UGGCC- -5'
19211 5' -52.7 NC_004684.1 + 10685 0.66 0.900152
Target:  5'- aACG-CCUCaacggucgGGACGCGguggcucgCAACCGGc -3'
miRNA:   3'- -UGUaGGAGga------CCUGUGCaa------GUUGGCC- -5'
19211 5' -52.7 NC_004684.1 + 5512 0.66 0.900152
Target:  5'- -gAUCCUgacgcCCUGGugGCG--CAGCUGGu -3'
miRNA:   3'- ugUAGGA-----GGACCugUGCaaGUUGGCC- -5'
19211 5' -52.7 NC_004684.1 + 14889 0.66 0.893173
Target:  5'- cCGUCCgcagaaCCUGGACACcUUCGugGCCa- -3'
miRNA:   3'- uGUAGGa-----GGACCUGUGcAAGU--UGGcc -5'
19211 5' -52.7 NC_004684.1 + 24993 0.66 0.893173
Target:  5'- gGCAUCCUgcccaaCCcGGuCGCGcUCAgcGCCGGu -3'
miRNA:   3'- -UGUAGGA------GGaCCuGUGCaAGU--UGGCC- -5'
19211 5' -52.7 NC_004684.1 + 45401 0.67 0.870688
Target:  5'- cAUggCCUCCUGGACcgcGCGggUCAGCUc- -3'
miRNA:   3'- -UGuaGGAGGACCUG---UGCa-AGUUGGcc -5'
19211 5' -52.7 NC_004684.1 + 35967 0.67 0.865922
Target:  5'- gGCGUCUcccaguacgccacguUCUUGGGCGCGUUgGcCUGGu -3'
miRNA:   3'- -UGUAGG---------------AGGACCUGUGCAAgUuGGCC- -5'
19211 5' -52.7 NC_004684.1 + 15044 0.67 0.862696
Target:  5'- ----gCUCCUGGACgACGUggggacGCCGGa -3'
miRNA:   3'- uguagGAGGACCUG-UGCAagu---UGGCC- -5'
19211 5' -52.7 NC_004684.1 + 66142 0.68 0.828424
Target:  5'- cGCAUCUgggCCgGGGC-CGggCGACCGa -3'
miRNA:   3'- -UGUAGGa--GGaCCUGuGCaaGUUGGCc -5'
19211 5' -52.7 NC_004684.1 + 45165 0.68 0.819323
Target:  5'- gGCGUCCUCCaGGucCAUGaagUCGGCCa- -3'
miRNA:   3'- -UGUAGGAGGaCCu-GUGCa--AGUUGGcc -5'
19211 5' -52.7 NC_004684.1 + 29661 0.68 0.800547
Target:  5'- gACGUgCUCCUGcGCGCGgcCGACCa- -3'
miRNA:   3'- -UGUAgGAGGACcUGUGCaaGUUGGcc -5'
19211 5' -52.7 NC_004684.1 + 13586 0.68 0.800547
Target:  5'- gGCAUUCUCCaGGAcCAgGgcUGGCCGGa -3'
miRNA:   3'- -UGUAGGAGGaCCU-GUgCaaGUUGGCC- -5'
19211 5' -52.7 NC_004684.1 + 37964 0.68 0.794774
Target:  5'- cCAUCgUCCUGGAggccaucguugccgaCGCGgugaAGCCGGa -3'
miRNA:   3'- uGUAGgAGGACCU---------------GUGCaag-UUGGCC- -5'
19211 5' -52.7 NC_004684.1 + 3822 0.69 0.781074
Target:  5'- ---aUCUgCUGGGCGCGUUCGgcguGCCGa -3'
miRNA:   3'- uguaGGAgGACCUGUGCAAGU----UGGCc -5'
19211 5' -52.7 NC_004684.1 + 16170 0.69 0.76099
Target:  5'- gGCcgCUgUCCUGGACGCGcUCAAgaaauaacCCGGu -3'
miRNA:   3'- -UGuaGG-AGGACCUGUGCaAGUU--------GGCC- -5'
19211 5' -52.7 NC_004684.1 + 3240 0.69 0.76099
Target:  5'- cGCcgCaUCCUGGGCcugACGUUCAAgCUGGa -3'
miRNA:   3'- -UGuaGgAGGACCUG---UGCAAGUU-GGCC- -5'
19211 5' -52.7 NC_004684.1 + 42010 0.69 0.750747
Target:  5'- gACAaCCUCCUGGAUccCGUacCGACCGa -3'
miRNA:   3'- -UGUaGGAGGACCUGu-GCAa-GUUGGCc -5'
19211 5' -52.7 NC_004684.1 + 29463 0.69 0.740384
Target:  5'- gACAUCgaCCUGGuGCGCGaccagCAGCUGGu -3'
miRNA:   3'- -UGUAGgaGGACC-UGUGCaa---GUUGGCC- -5'
19211 5' -52.7 NC_004684.1 + 17480 0.7 0.697964
Target:  5'- cCGUCCaaCCUGGGCGCGaUCAccauguCCGGc -3'
miRNA:   3'- uGUAGGa-GGACCUGUGCaAGUu-----GGCC- -5'
19211 5' -52.7 NC_004684.1 + 32755 0.71 0.665447
Target:  5'- cGCggCCgaCCUGGugGCGUgagCAugACCGGg -3'
miRNA:   3'- -UGuaGGa-GGACCugUGCAa--GU--UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.