miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19212 3' -57.5 NC_004684.1 + 23848 0.66 0.645623
Target:  5'- cGGUACCu--CACCGUuCgGAGGUGg- -3'
miRNA:   3'- -CCGUGGuucGUGGCGuGgCUCCACaa -5'
19212 3' -57.5 NC_004684.1 + 42897 0.66 0.645623
Target:  5'- cGGC-CCugcGGCACCGCcCCGGcGGUa-- -3'
miRNA:   3'- -CCGuGGu--UCGUGGCGuGGCU-CCAcaa -5'
19212 3' -57.5 NC_004684.1 + 40275 0.66 0.645623
Target:  5'- aGGcCACCccGUugACCGCGCCGucguuGGUGUc -3'
miRNA:   3'- -CC-GUGGuuCG--UGGCGUGGCu----CCACAa -5'
19212 3' -57.5 NC_004684.1 + 52243 0.66 0.634818
Target:  5'- cGGCgGCC-AGCugCGCGCUGGcGUGg- -3'
miRNA:   3'- -CCG-UGGuUCGugGCGUGGCUcCACaa -5'
19212 3' -57.5 NC_004684.1 + 15521 0.66 0.634818
Target:  5'- cGGgGCCGGGCGCUggagGCGCUGAuccgcguuGGUGg- -3'
miRNA:   3'- -CCgUGGUUCGUGG----CGUGGCU--------CCACaa -5'
19212 3' -57.5 NC_004684.1 + 5939 0.66 0.634818
Target:  5'- uGGcCACCGGGCgguccaaccugGCCGCGCC--GGUGa- -3'
miRNA:   3'- -CC-GUGGUUCG-----------UGGCGUGGcuCCACaa -5'
19212 3' -57.5 NC_004684.1 + 901 0.66 0.634818
Target:  5'- aGGCcgccGCCAAGgccuaGCCGcCACCG-GGUGg- -3'
miRNA:   3'- -CCG----UGGUUCg----UGGC-GUGGCuCCACaa -5'
19212 3' -57.5 NC_004684.1 + 14565 0.66 0.634818
Target:  5'- uGGaCACCugguGCGCCGgggcCACCGAGGa--- -3'
miRNA:   3'- -CC-GUGGuu--CGUGGC----GUGGCUCCacaa -5'
19212 3' -57.5 NC_004684.1 + 9560 0.66 0.62401
Target:  5'- gGGUACCGgcggccAGCACCGCcgggaccagGCCGuGGUc-- -3'
miRNA:   3'- -CCGUGGU------UCGUGGCG---------UGGCuCCAcaa -5'
19212 3' -57.5 NC_004684.1 + 2732 0.66 0.62401
Target:  5'- aGGUGCC--GCugCGCGCCGAcaucgcGGUGc- -3'
miRNA:   3'- -CCGUGGuuCGugGCGUGGCU------CCACaa -5'
19212 3' -57.5 NC_004684.1 + 19775 0.66 0.62401
Target:  5'- aGGCcgacGCCGAGUACCGa--CGGcGGUGUg -3'
miRNA:   3'- -CCG----UGGUUCGUGGCgugGCU-CCACAa -5'
19212 3' -57.5 NC_004684.1 + 43838 0.66 0.62401
Target:  5'- aGGCuguCCAGGCcgcgACCGaugcCGCCGAGGUugGUg -3'
miRNA:   3'- -CCGu--GGUUCG----UGGC----GUGGCUCCA--CAa -5'
19212 3' -57.5 NC_004684.1 + 3551 0.66 0.62401
Target:  5'- uGGCACCGAcagcguGCGCCGCGCCa------- -3'
miRNA:   3'- -CCGUGGUU------CGUGGCGUGGcuccacaa -5'
19212 3' -57.5 NC_004684.1 + 27047 0.66 0.61321
Target:  5'- aGGcCGCCGccAGCgACCugcccaGCGCCGAGGUcGUg -3'
miRNA:   3'- -CC-GUGGU--UCG-UGG------CGUGGCUCCA-CAa -5'
19212 3' -57.5 NC_004684.1 + 49752 0.66 0.61321
Target:  5'- cGGCACgGAGCGCaccaGCGC--GGGUGa- -3'
miRNA:   3'- -CCGUGgUUCGUGg---CGUGgcUCCACaa -5'
19212 3' -57.5 NC_004684.1 + 57055 0.66 0.61321
Target:  5'- cGGCACCAgcgcgguggcaGGCACCaccuggaaCGAGGUGg- -3'
miRNA:   3'- -CCGUGGU-----------UCGUGGcgug----GCUCCACaa -5'
19212 3' -57.5 NC_004684.1 + 37247 0.66 0.61321
Target:  5'- cGCACCGgauaucacccAGaCACCGC-CCGAGGa--- -3'
miRNA:   3'- cCGUGGU----------UC-GUGGCGuGGCUCCacaa -5'
19212 3' -57.5 NC_004684.1 + 56036 0.66 0.61321
Target:  5'- cGGCACCucGCGggucUCGCGCuCGGGGUu-- -3'
miRNA:   3'- -CCGUGGuuCGU----GGCGUG-GCUCCAcaa -5'
19212 3' -57.5 NC_004684.1 + 21613 0.66 0.61321
Target:  5'- aGGUcuacgACC-GGUACCGCACCGGcGUGa- -3'
miRNA:   3'- -CCG-----UGGuUCGUGGCGUGGCUcCACaa -5'
19212 3' -57.5 NC_004684.1 + 25703 0.66 0.61321
Target:  5'- -aCGCCGu-CGCCGCGCUG-GGUGUUg -3'
miRNA:   3'- ccGUGGUucGUGGCGUGGCuCCACAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.