miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19212 5' -57.7 NC_004684.1 + 37252 0.66 0.694584
Target:  5'- gCCGACGCgcacacugcgCGGUGccuguagcUCGCGCA-GGCGUUg -3'
miRNA:   3'- -GGUUGUG----------GCCGC--------AGUGCGUgCCGCAG- -5'
19212 5' -57.7 NC_004684.1 + 43202 0.66 0.694584
Target:  5'- aCCGcagGCACCGGCaUUuuGgGCGGCGg- -3'
miRNA:   3'- -GGU---UGUGGCCGcAGugCgUGCCGCag -5'
19212 5' -57.7 NC_004684.1 + 28915 0.66 0.694584
Target:  5'- gCUGACGCCGGUGcC-UGCcuuguCGGCGUg -3'
miRNA:   3'- -GGUUGUGGCCGCaGuGCGu----GCCGCAg -5'
19212 5' -57.7 NC_004684.1 + 18888 0.66 0.694584
Target:  5'- aCCAGCG-CGGCuccucCACGUcgGCGGgGUCg -3'
miRNA:   3'- -GGUUGUgGCCGca---GUGCG--UGCCgCAG- -5'
19212 5' -57.7 NC_004684.1 + 64651 0.66 0.694584
Target:  5'- cUCGACGCCGaacGUGUgGcCGUGCGGUGUg -3'
miRNA:   3'- -GGUUGUGGC---CGCAgU-GCGUGCCGCAg -5'
19212 5' -57.7 NC_004684.1 + 19105 0.66 0.694584
Target:  5'- gCgAAgGCCGGUGggacgUGCGCAUGGUGg- -3'
miRNA:   3'- -GgUUgUGGCCGCa----GUGCGUGCCGCag -5'
19212 5' -57.7 NC_004684.1 + 52392 0.66 0.694584
Target:  5'- aCCAugACCuGC-UCGCGCA-GGCG-Ca -3'
miRNA:   3'- -GGUugUGGcCGcAGUGCGUgCCGCaG- -5'
19212 5' -57.7 NC_004684.1 + 56503 0.66 0.694584
Target:  5'- gCCGAC-CCGGgugGUCAC---CGGCGUCg -3'
miRNA:   3'- -GGUUGuGGCCg--CAGUGcguGCCGCAG- -5'
19212 5' -57.7 NC_004684.1 + 1943 0.66 0.694584
Target:  5'- aCCGGCGCaCGGUGgcCGCGCGCcGCa-- -3'
miRNA:   3'- -GGUUGUG-GCCGCa-GUGCGUGcCGcag -5'
19212 5' -57.7 NC_004684.1 + 20495 0.66 0.688331
Target:  5'- cUCGACACCa---UCACGCcguauggucccgaagGCGGCGUCa -3'
miRNA:   3'- -GGUUGUGGccgcAGUGCG---------------UGCCGCAG- -5'
19212 5' -57.7 NC_004684.1 + 41404 0.66 0.688331
Target:  5'- gCCAggaGCGCCaGCGgguugccuUCGCGCAccagcuuggccagcuCGGCGUUg -3'
miRNA:   3'- -GGU---UGUGGcCGC--------AGUGCGU---------------GCCGCAG- -5'
19212 5' -57.7 NC_004684.1 + 4290 0.66 0.688331
Target:  5'- aCAAUgccGCCGG-GUCGCcguaauguagugcuuGCACGGCGg- -3'
miRNA:   3'- gGUUG---UGGCCgCAGUG---------------CGUGCCGCag -5'
19212 5' -57.7 NC_004684.1 + 23770 0.66 0.684152
Target:  5'- gCCGugGgGCgCGGCGUUggGCGCGaugaucggcgcUGGCGUCa -3'
miRNA:   3'- -GGU--UgUG-GCCGCAG--UGCGU-----------GCCGCAG- -5'
19212 5' -57.7 NC_004684.1 + 36478 0.66 0.684152
Target:  5'- uCC-ACGCCuGCGgCAUGCcgguCGGUGUCu -3'
miRNA:   3'- -GGuUGUGGcCGCaGUGCGu---GCCGCAG- -5'
19212 5' -57.7 NC_004684.1 + 42648 0.66 0.684152
Target:  5'- gCCAGCAggucacgaauCUGGCGcagCACGCccagcuCGGUGUUg -3'
miRNA:   3'- -GGUUGU----------GGCCGCa--GUGCGu-----GCCGCAG- -5'
19212 5' -57.7 NC_004684.1 + 43760 0.66 0.684152
Target:  5'- aCggUACCGGCGuggUCAgGC-CGGguaCGUCg -3'
miRNA:   3'- gGuuGUGGCCGC---AGUgCGuGCC---GCAG- -5'
19212 5' -57.7 NC_004684.1 + 26563 0.66 0.684152
Target:  5'- --cGCGuuCCGGCGcgcccUgGCGCGCGGCGg- -3'
miRNA:   3'- gguUGU--GGCCGC-----AgUGCGUGCCGCag -5'
19212 5' -57.7 NC_004684.1 + 31158 0.66 0.684152
Target:  5'- aCCAAC-CCGGCGgcggUGCugGGCc-- -3'
miRNA:   3'- -GGUUGuGGCCGCagu-GCGugCCGcag -5'
19212 5' -57.7 NC_004684.1 + 2542 0.66 0.684152
Target:  5'- gCGGCACCuGCGUggaGCGCGCGGaGg- -3'
miRNA:   3'- gGUUGUGGcCGCAg--UGCGUGCCgCag -5'
19212 5' -57.7 NC_004684.1 + 41678 0.66 0.684152
Target:  5'- gCCGACcUCGGCaaCACccaGCGCGGCGa- -3'
miRNA:   3'- -GGUUGuGGCCGcaGUG---CGUGCCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.