miRNA display CGI


Results 21 - 40 of 289 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19213 3' -65.8 NC_004684.1 + 9579 0.66 0.283695
Target:  5'- cGCCGgGaCCAGGCCG--UGGUCGg- -3'
miRNA:   3'- aCGGCgCgGGUCCGGCcaACCGGCgg -5'
19213 3' -65.8 NC_004684.1 + 35927 0.66 0.283695
Target:  5'- gGUCGCGCCgAGGaccugcucuaCGGgcGGCUGUUc -3'
miRNA:   3'- aCGGCGCGGgUCCg---------GCCaaCCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 27352 0.66 0.283695
Target:  5'- aGCCGUGCgaGGGggaucggcCCGGUcUGcGCCGCUa -3'
miRNA:   3'- aCGGCGCGggUCC--------GGCCA-AC-CGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 1247 0.66 0.283695
Target:  5'- gGUCGCccggccccgGCCCAGaugcGCUGGcUGGUgGCCa -3'
miRNA:   3'- aCGGCG---------CGGGUC----CGGCCaACCGgCGG- -5'
19213 3' -65.8 NC_004684.1 + 9839 0.66 0.283695
Target:  5'- uUGCCGuCGaucaCCGccGCCGGUgagcuGCCGCCg -3'
miRNA:   3'- -ACGGC-GCg---GGUc-CGGCCAac---CGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 9793 0.66 0.283695
Target:  5'- cGCCGagGCCCuGcGCCGG-UGGCaC-CCg -3'
miRNA:   3'- aCGGCg-CGGGuC-CGGCCaACCG-GcGG- -5'
19213 3' -65.8 NC_004684.1 + 6528 0.66 0.283695
Target:  5'- cGCauCGCGCuCCcGGCCGacaucGCCGCCg -3'
miRNA:   3'- aCG--GCGCG-GGuCCGGCcaac-CGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 34709 0.66 0.283695
Target:  5'- uUGCgGuUGCCgAGGCCGuagccauGCCGCCg -3'
miRNA:   3'- -ACGgC-GCGGgUCCGGCcaac---CGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 52828 0.66 0.283695
Target:  5'- gGCCccgGCGCaCCAGGUguccagCGGUacGCCGUCa -3'
miRNA:   3'- aCGG---CGCG-GGUCCG------GCCAacCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 28558 0.66 0.283695
Target:  5'- cGCCaGgGCcaCCAGGCCGucgGGCacCGCCa -3'
miRNA:   3'- aCGG-CgCG--GGUCCGGCcaaCCG--GCGG- -5'
19213 3' -65.8 NC_004684.1 + 59467 0.66 0.283695
Target:  5'- gGCCuuGCCUGgguucuccaccGGCUGGcUGGCgGCCa -3'
miRNA:   3'- aCGGcgCGGGU-----------CCGGCCaACCGgCGG- -5'
19213 3' -65.8 NC_004684.1 + 54408 0.66 0.283695
Target:  5'- -cCCG-GCCCGGcGCuCGGUguugccuGCCGCCg -3'
miRNA:   3'- acGGCgCGGGUC-CG-GCCAac-----CGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 51992 0.66 0.283695
Target:  5'- gGCCaucGCGCCCu-GCCGGUagaucgGGgCGUCg -3'
miRNA:   3'- aCGG---CGCGGGucCGGCCAa-----CCgGCGG- -5'
19213 3' -65.8 NC_004684.1 + 30690 0.66 0.283695
Target:  5'- aGgCGacaCGCUCAcGCCGGUgGGCaCGCCa -3'
miRNA:   3'- aCgGC---GCGGGUcCGGCCAaCCG-GCGG- -5'
19213 3' -65.8 NC_004684.1 + 6297 0.66 0.283695
Target:  5'- aGCCGCGUcgaCCGguGGCgGcGUUGcggagacaauGCCGCCa -3'
miRNA:   3'- aCGGCGCG---GGU--CCGgC-CAAC----------CGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 9973 0.66 0.283036
Target:  5'- cGCCGCcgGCacaCcGGUCGaGUgauacgcUGGCCGCCu -3'
miRNA:   3'- aCGGCG--CGg--GuCCGGC-CA-------ACCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 43977 0.66 0.283036
Target:  5'- aGCCGUGCgCGGGCguacccggccagcUGcGUUGGCCagGUCa -3'
miRNA:   3'- aCGGCGCGgGUCCG-------------GC-CAACCGG--CGG- -5'
19213 3' -65.8 NC_004684.1 + 689 0.66 0.279757
Target:  5'- cGCCGCGCagcgcaagaccgccgCCGGGUgGGaagaccUGGgcaCCGCCg -3'
miRNA:   3'- aCGGCGCG---------------GGUCCGgCCa-----ACC---GGCGG- -5'
19213 3' -65.8 NC_004684.1 + 10292 0.66 0.277804
Target:  5'- gUGUCGCGCCagAGGUCGcccgcaccgauGUgcgcgccgcaacgcaGGCCGCCa -3'
miRNA:   3'- -ACGGCGCGGg-UCCGGC-----------CAa--------------CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 53825 0.66 0.277156
Target:  5'- aUGCC-CGCCucgacgCAGuaGCCGa-UGGCCGCCa -3'
miRNA:   3'- -ACGGcGCGG------GUC--CGGCcaACCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.