miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19213 5' -55.7 NC_004684.1 + 59899 0.66 0.781328
Target:  5'- aUGcggCGGcgcacGAACCGGCCCUUGUcaGCGu -3'
miRNA:   3'- cACa--GCCc----CUUGGUCGGGAACA--UGCc -5'
19213 5' -55.7 NC_004684.1 + 58934 0.66 0.751535
Target:  5'- ---cCGGGGAcaacaGCCAGgCCUUGcgcCGGg -3'
miRNA:   3'- cacaGCCCCU-----UGGUCgGGAACau-GCC- -5'
19213 5' -55.7 NC_004684.1 + 30321 0.66 0.751535
Target:  5'- -gGUCGGGGcACCGGCCacgucguUUG-ACGa -3'
miRNA:   3'- caCAGCCCCuUGGUCGGg------AACaUGCc -5'
19213 5' -55.7 NC_004684.1 + 5762 0.66 0.741356
Target:  5'- ---cCGGGGGguucgACUGGCCCaagugcguggUGUGCGGg -3'
miRNA:   3'- cacaGCCCCU-----UGGUCGGGa---------ACAUGCC- -5'
19213 5' -55.7 NC_004684.1 + 27355 0.66 0.741356
Target:  5'- cGUGcgaGGGGGAUCGGCCCggucUGCGc -3'
miRNA:   3'- -CACag-CCCCUUGGUCGGGaac-AUGCc -5'
19213 5' -55.7 NC_004684.1 + 50656 0.66 0.731074
Target:  5'- -cGUCGGGGGugCGGaCCaggcGUGCGc -3'
miRNA:   3'- caCAGCCCCUugGUC-GGgaa-CAUGCc -5'
19213 5' -55.7 NC_004684.1 + 982 0.66 0.73004
Target:  5'- ---cCGGGGcguucucGGCCAGCaCCaagGUGCGGa -3'
miRNA:   3'- cacaGCCCC-------UUGGUCG-GGaa-CAUGCC- -5'
19213 5' -55.7 NC_004684.1 + 49509 0.67 0.720696
Target:  5'- -cGUCGGGGGugUagcGGCCCagcGUGCa- -3'
miRNA:   3'- caCAGCCCCUugG---UCGGGaa-CAUGcc -5'
19213 5' -55.7 NC_004684.1 + 47312 0.67 0.699698
Target:  5'- -cGUCGGGGuugaacGCCAGCUUgaGcGCGGc -3'
miRNA:   3'- caCAGCCCCu-----UGGUCGGGaaCaUGCC- -5'
19213 5' -55.7 NC_004684.1 + 44920 0.68 0.667757
Target:  5'- cUGcCaGGGAACCGGCCUggaGcGCGGg -3'
miRNA:   3'- cACaGcCCCUUGGUCGGGaa-CaUGCC- -5'
19213 5' -55.7 NC_004684.1 + 54758 0.68 0.667757
Target:  5'- -cGUCGGGGGucaguuccucGCCGguGCCCgcaagGUGCGcGg -3'
miRNA:   3'- caCAGCCCCU----------UGGU--CGGGaa---CAUGC-C- -5'
19213 5' -55.7 NC_004684.1 + 49695 0.68 0.657033
Target:  5'- gGUGgcgCGGaGGGugUAGCCCUUcaccACGGg -3'
miRNA:   3'- -CACa--GCC-CCUugGUCGGGAAca--UGCC- -5'
19213 5' -55.7 NC_004684.1 + 32779 0.68 0.657033
Target:  5'- -cGUCGGGGAACCcGUUCaUG-AUGGu -3'
miRNA:   3'- caCAGCCCCUUGGuCGGGaACaUGCC- -5'
19213 5' -55.7 NC_004684.1 + 62413 0.68 0.646286
Target:  5'- -cGUCGcGGAGUCGGCCUccgacauguguUUGUACGGg -3'
miRNA:   3'- caCAGCcCCUUGGUCGGG-----------AACAUGCC- -5'
19213 5' -55.7 NC_004684.1 + 60761 0.68 0.624766
Target:  5'- -cGUCaGGGAGCaCGGCCCUggccaGgcCGGu -3'
miRNA:   3'- caCAGcCCCUUG-GUCGGGAa----CauGCC- -5'
19213 5' -55.7 NC_004684.1 + 26423 0.68 0.61401
Target:  5'- cUGgcagCGGGGuucGCCgccgguGGCCCggUGUACGGc -3'
miRNA:   3'- cACa---GCCCCu--UGG------UCGGGa-ACAUGCC- -5'
19213 5' -55.7 NC_004684.1 + 18906 0.69 0.60649
Target:  5'- -cGUCGGcGGGgucgcggcgcaucagACCAgGCCCUUGUccauguaGCGGc -3'
miRNA:   3'- caCAGCC-CCU---------------UGGU-CGGGAACA-------UGCC- -5'
19213 5' -55.7 NC_004684.1 + 54389 0.69 0.571223
Target:  5'- -cGUCGGGGGAcauaauccacCCGGCCCggcgcuCGGu -3'
miRNA:   3'- caCAGCCCCUU----------GGUCGGGaacau-GCC- -5'
19213 5' -55.7 NC_004684.1 + 31508 0.71 0.468489
Target:  5'- aGUGUCGGGGAcCaCGGCCCgc--GCGa -3'
miRNA:   3'- -CACAGCCCCUuG-GUCGGGaacaUGCc -5'
19213 5' -55.7 NC_004684.1 + 39366 1.09 0.001242
Target:  5'- gGUGUCGGGGAACCAGCCCUUGUACGGc -3'
miRNA:   3'- -CACAGCCCCUUGGUCGGGAACAUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.