miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19214 3' -65 NC_004684.1 + 50043 0.66 0.308016
Target:  5'- -cGGugCcUGGCUCCAGGCC-AGGa- -3'
miRNA:   3'- uuCCugGcACCGGGGUCCGGcUCCgc -5'
19214 3' -65 NC_004684.1 + 476 0.66 0.308016
Target:  5'- cGAGG-UUGUGGCCgCCaAGGCCGcgccgaAGGCc -3'
miRNA:   3'- -UUCCuGGCACCGG-GG-UCCGGC------UCCGc -5'
19214 3' -65 NC_004684.1 + 441 0.66 0.305886
Target:  5'- cGAGGACaccgcugcgcgcauCGUGGCCguggacaaCCGGGCCagcGAGGuCGg -3'
miRNA:   3'- -UUCCUG--------------GCACCGG--------GGUCCGG---CUCC-GC- -5'
19214 3' -65 NC_004684.1 + 19992 0.66 0.300263
Target:  5'- cAGGcACCgGUGGUCCUgugaccgcaccggAGGCCGuGGUGc -3'
miRNA:   3'- uUCC-UGG-CACCGGGG-------------UCCGGCuCCGC- -5'
19214 3' -65 NC_004684.1 + 45478 0.66 0.287228
Target:  5'- --cGGCgGUGGUCaCCGGGCC-AGGCu -3'
miRNA:   3'- uucCUGgCACCGG-GGUCCGGcUCCGc -5'
19214 3' -65 NC_004684.1 + 65970 0.66 0.280549
Target:  5'- -uGGACCuUGGCCCggCAGGCCuccAGGUc -3'
miRNA:   3'- uuCCUGGcACCGGG--GUCCGGc--UCCGc -5'
19214 3' -65 NC_004684.1 + 3488 0.66 0.273993
Target:  5'- cGGGccgcACCGUGGCCgCCAGgacgccgcaaucGCCGAcgGGUGg -3'
miRNA:   3'- uUCC----UGGCACCGG-GGUC------------CGGCU--CCGC- -5'
19214 3' -65 NC_004684.1 + 43718 0.67 0.267561
Target:  5'- -uGGuCCG-GGCCgaCCAGGCCGucGGUGu -3'
miRNA:   3'- uuCCuGGCaCCGG--GGUCCGGCu-CCGC- -5'
19214 3' -65 NC_004684.1 + 1421 0.67 0.267561
Target:  5'- gGAGGccuGCCG-GGCCaagguCCAGGCCGAGcUGg -3'
miRNA:   3'- -UUCC---UGGCaCCGG-----GGUCCGGCUCcGC- -5'
19214 3' -65 NC_004684.1 + 13098 0.67 0.267561
Target:  5'- aGGGGGCCGaUGcgcgcaCCCCcGGCCGGguGGCGg -3'
miRNA:   3'- -UUCCUGGC-ACc-----GGGGuCCGGCU--CCGC- -5'
19214 3' -65 NC_004684.1 + 845 0.67 0.263761
Target:  5'- uGAGGcgcacaacgccuaccGCCGUGcCCgCCGGGCCGcgcugaAGGCGg -3'
miRNA:   3'- -UUCC---------------UGGCACcGG-GGUCCGGC------UCCGC- -5'
19214 3' -65 NC_004684.1 + 28554 0.67 0.255064
Target:  5'- uGAGcGCCaG-GGCCaCCAGGCCGucGGGCa -3'
miRNA:   3'- -UUCcUGG-CaCCGG-GGUCCGGC--UCCGc -5'
19214 3' -65 NC_004684.1 + 64954 0.67 0.255064
Target:  5'- -cGGGCgGUGGCCCgguuCAGGUCGAugaccGCGa -3'
miRNA:   3'- uuCCUGgCACCGGG----GUCCGGCUc----CGC- -5'
19214 3' -65 NC_004684.1 + 40653 0.67 0.248996
Target:  5'- uGGGGGCC-UGGCCCCGccagucgcgcucGGCCagcaAGGUGg -3'
miRNA:   3'- -UUCCUGGcACCGGGGU------------CCGGc---UCCGC- -5'
19214 3' -65 NC_004684.1 + 51441 0.67 0.248396
Target:  5'- gGGGGAgCCGUagcucauGcGCCCgGuGGCCGAGGCc -3'
miRNA:   3'- -UUCCU-GGCA-------C-CGGGgU-CCGGCUCCGc -5'
19214 3' -65 NC_004684.1 + 25283 0.67 0.243049
Target:  5'- cAAGGGCCuuccGGCCacaCCAGGCgGcGGCGg -3'
miRNA:   3'- -UUCCUGGca--CCGG---GGUCCGgCuCCGC- -5'
19214 3' -65 NC_004684.1 + 7318 0.67 0.239538
Target:  5'- gAAGGcCCGcacgGGCCgCCGGGCCgcgcgccacgagugcGAGGCc -3'
miRNA:   3'- -UUCCuGGCa---CCGG-GGUCCGG---------------CUCCGc -5'
19214 3' -65 NC_004684.1 + 27015 0.67 0.23722
Target:  5'- gAAGGccgccaccGCCGaGGCCCCcaAGGCCaAGGCc -3'
miRNA:   3'- -UUCC--------UGGCaCCGGGG--UCCGGcUCCGc -5'
19214 3' -65 NC_004684.1 + 47129 0.67 0.23722
Target:  5'- cAGGGGCCGggaacGCgCCGGGCCGGaaguaguaccGGCGc -3'
miRNA:   3'- -UUCCUGGCac---CGgGGUCCGGCU----------CCGC- -5'
19214 3' -65 NC_004684.1 + 2117 0.68 0.225914
Target:  5'- uGGGGaACCGUGGCCauugCCGGGUuccUGGGaGCGg -3'
miRNA:   3'- -UUCC-UGGCACCGG----GGUCCG---GCUC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.