miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19214 5' -55.2 NC_004684.1 + 51910 0.66 0.81735
Target:  5'- aCUCGGCgaacggGUGGCuGGUGguCCACu- -3'
miRNA:   3'- -GAGCCGag----CACUGuCCAUguGGUGcc -5'
19214 5' -55.2 NC_004684.1 + 52095 0.66 0.808206
Target:  5'- -cCGGCcaCGUcGaccaggcccaGCAGGUGCACCGCGc -3'
miRNA:   3'- gaGCCGa-GCA-C----------UGUCCAUGUGGUGCc -5'
19214 5' -55.2 NC_004684.1 + 28071 0.66 0.808206
Target:  5'- -cCGGCggUGUGGCcGGgcCGCCGCGc -3'
miRNA:   3'- gaGCCGa-GCACUGuCCauGUGGUGCc -5'
19214 5' -55.2 NC_004684.1 + 49098 0.66 0.808206
Target:  5'- -cCGGCagGUGccACAGGU-CGCCGuCGGc -3'
miRNA:   3'- gaGCCGagCAC--UGUCCAuGUGGU-GCC- -5'
19214 5' -55.2 NC_004684.1 + 65197 0.66 0.798888
Target:  5'- cCUCGGCguaGUGGCcGuGcgGCACCucGCGGg -3'
miRNA:   3'- -GAGCCGag-CACUGuC-Ca-UGUGG--UGCC- -5'
19214 5' -55.2 NC_004684.1 + 9209 0.66 0.789403
Target:  5'- gUgGGCgCGUGAcCGGGUGgGCCA-GGa -3'
miRNA:   3'- gAgCCGaGCACU-GUCCAUgUGGUgCC- -5'
19214 5' -55.2 NC_004684.1 + 26586 0.66 0.789403
Target:  5'- -gCGGCggUGUGcGCGGGUuCGCCAcCGGc -3'
miRNA:   3'- gaGCCGa-GCAC-UGUCCAuGUGGU-GCC- -5'
19214 5' -55.2 NC_004684.1 + 35895 0.66 0.789403
Target:  5'- uUCGGCggUCGcGGcCAGGUGgACCGCa- -3'
miRNA:   3'- gAGCCG--AGCaCU-GUCCAUgUGGUGcc -5'
19214 5' -55.2 NC_004684.1 + 55790 0.66 0.779763
Target:  5'- gCUCGGUgccgUCGUc-CAGGcGCACCgGCGGg -3'
miRNA:   3'- -GAGCCG----AGCAcuGUCCaUGUGG-UGCC- -5'
19214 5' -55.2 NC_004684.1 + 37385 0.66 0.776842
Target:  5'- gCUCGGCcagcUCG-GGCAGGUcaucguucacGCuguccaucgacaccGCCACGGu -3'
miRNA:   3'- -GAGCCG----AGCaCUGUCCA----------UG--------------UGGUGCC- -5'
19214 5' -55.2 NC_004684.1 + 61801 0.67 0.769978
Target:  5'- gCUCGGCcccgUCGgcaGGCGGGU-CGCCuugcagGCGGu -3'
miRNA:   3'- -GAGCCG----AGCa--CUGUCCAuGUGG------UGCC- -5'
19214 5' -55.2 NC_004684.1 + 43885 0.67 0.769978
Target:  5'- uUCGGCgcaUCGcugGGCAGGUGgAUgaCACGGc -3'
miRNA:   3'- gAGCCG---AGCa--CUGUCCAUgUG--GUGCC- -5'
19214 5' -55.2 NC_004684.1 + 38542 0.67 0.768992
Target:  5'- -cCGGUUCGUGACGGccagccaGUuCGCCGCa- -3'
miRNA:   3'- gaGCCGAGCACUGUC-------CAuGUGGUGcc -5'
19214 5' -55.2 NC_004684.1 + 40335 0.67 0.760058
Target:  5'- cCUCGGCgcugGGCAGGU-CGCUggcgGCGGc -3'
miRNA:   3'- -GAGCCGagcaCUGUCCAuGUGG----UGCC- -5'
19214 5' -55.2 NC_004684.1 + 18413 0.67 0.760058
Target:  5'- uUCGGCggCccGGCGGGcGCACCgGCGGc -3'
miRNA:   3'- gAGCCGa-GcaCUGUCCaUGUGG-UGCC- -5'
19214 5' -55.2 NC_004684.1 + 45764 0.67 0.760058
Target:  5'- gCUCGGU---UGGCAGGcGCACCuccagGCGGu -3'
miRNA:   3'- -GAGCCGagcACUGUCCaUGUGG-----UGCC- -5'
19214 5' -55.2 NC_004684.1 + 47357 0.67 0.750013
Target:  5'- -cCGcGCUgaUGGCGGGgucuucagGCACCACGGc -3'
miRNA:   3'- gaGC-CGAgcACUGUCCa-------UGUGGUGCC- -5'
19214 5' -55.2 NC_004684.1 + 59875 0.67 0.750013
Target:  5'- gUCGGUcCG-GGCAGGUcCACCccgauGCGGc -3'
miRNA:   3'- gAGCCGaGCaCUGUCCAuGUGG-----UGCC- -5'
19214 5' -55.2 NC_004684.1 + 51320 0.67 0.750013
Target:  5'- uUCGGCUCaccGGCGGGccacgcuugcUugGCCACGa -3'
miRNA:   3'- gAGCCGAGca-CUGUCC----------AugUGGUGCc -5'
19214 5' -55.2 NC_004684.1 + 43445 0.67 0.739855
Target:  5'- --aGGCUCGgcaGGCGGGU--GCCGCGc -3'
miRNA:   3'- gagCCGAGCa--CUGUCCAugUGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.