miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19215 5' -59 NC_004684.1 + 4087 0.66 0.60172
Target:  5'- cUGUCGAagcucucgcgcgUGGUGcagGGauaCGCCCGGCGGc -3'
miRNA:   3'- cACAGCU------------ACCGCa--UC---GCGGGCCGUCc -5'
19215 5' -59 NC_004684.1 + 32912 0.66 0.591207
Target:  5'- gGUGUCcucGGCGgugccggaccgGGUGCCUcgGGCAGGa -3'
miRNA:   3'- -CACAGcuaCCGCa----------UCGCGGG--CCGUCC- -5'
19215 5' -59 NC_004684.1 + 33998 0.66 0.591207
Target:  5'- gGUGUUGGUGaacgugacCGUGGuCGCCgucaaCGGCGGGa -3'
miRNA:   3'- -CACAGCUACc-------GCAUC-GCGG-----GCCGUCC- -5'
19215 5' -59 NC_004684.1 + 48957 0.66 0.580727
Target:  5'- -cGUCGGcgGGCGgGGUGgCCggGGCGGGc -3'
miRNA:   3'- caCAGCUa-CCGCaUCGCgGG--CCGUCC- -5'
19215 5' -59 NC_004684.1 + 47324 0.66 0.570285
Target:  5'- cGUGUCGccggugugGGCGUcgAGCauggccaccagGCCaCGGUAGGa -3'
miRNA:   3'- -CACAGCua------CCGCA--UCG-----------CGG-GCCGUCC- -5'
19215 5' -59 NC_004684.1 + 6201 0.66 0.570285
Target:  5'- aUGUCGAUGGCcuccGGCGCgaucUCGGCcagcuGGg -3'
miRNA:   3'- cACAGCUACCGca--UCGCG----GGCCGu----CC- -5'
19215 5' -59 NC_004684.1 + 58009 0.66 0.558853
Target:  5'- -cGUCGGUaccGGCGUcguccucGGUGUCCGGCuccucgcgccGGGa -3'
miRNA:   3'- caCAGCUA---CCGCA-------UCGCGGGCCG----------UCC- -5'
19215 5' -59 NC_004684.1 + 65031 0.66 0.555746
Target:  5'- aUGUCGAUGGCGgccacgaacucagGGCGgcaguCCgGGUAGa -3'
miRNA:   3'- cACAGCUACCGCa------------UCGC-----GGgCCGUCc -5'
19215 5' -59 NC_004684.1 + 57358 0.66 0.549548
Target:  5'- cGUGgCGAUGauGCGcucccggucGGCGCgCGGCAGGu -3'
miRNA:   3'- -CACaGCUAC--CGCa--------UCGCGgGCCGUCC- -5'
19215 5' -59 NC_004684.1 + 26351 0.66 0.549548
Target:  5'- -cGUCGGUGuaGUGccguGCGUugUCGGCAGGc -3'
miRNA:   3'- caCAGCUACcgCAU----CGCG--GGCCGUCC- -5'
19215 5' -59 NC_004684.1 + 53658 0.67 0.539266
Target:  5'- -cGUCGGUGaaGCGcaGGCGCacaCGGguGGg -3'
miRNA:   3'- caCAGCUAC--CGCa-UCGCGg--GCCguCC- -5'
19215 5' -59 NC_004684.1 + 34648 0.67 0.539266
Target:  5'- -cGUCaGAUGGUG-GGCauuaUCCGGCAGGc -3'
miRNA:   3'- caCAG-CUACCGCaUCGc---GGGCCGUCC- -5'
19215 5' -59 NC_004684.1 + 6073 0.67 0.52905
Target:  5'- -cGcCGAgGGCGgcG-GCCCGGCGGcGg -3'
miRNA:   3'- caCaGCUaCCGCauCgCGGGCCGUC-C- -5'
19215 5' -59 NC_004684.1 + 50656 0.67 0.527015
Target:  5'- -cGUCGGgggugcggaccaGGCGU-GCGCCCGGUgccgugcaaucGGGu -3'
miRNA:   3'- caCAGCUa-----------CCGCAuCGCGGGCCG-----------UCC- -5'
19215 5' -59 NC_004684.1 + 65755 0.67 0.518907
Target:  5'- --cUCGcgGGCGUuggccgccGCGCgCCGGUGGGc -3'
miRNA:   3'- cacAGCuaCCGCAu-------CGCG-GGCCGUCC- -5'
19215 5' -59 NC_004684.1 + 3134 0.67 0.518907
Target:  5'- -cGUUcgGGUGGUGUgcgccaacacccAGCGCCUGGCcgAGGc -3'
miRNA:   3'- caCAG--CUACCGCA------------UCGCGGGCCG--UCC- -5'
19215 5' -59 NC_004684.1 + 57296 0.67 0.517896
Target:  5'- uUGUCGccGGUGUGGCugagcaCCCGGCgcaccacGGGg -3'
miRNA:   3'- cACAGCuaCCGCAUCGc-----GGGCCG-------UCC- -5'
19215 5' -59 NC_004684.1 + 65386 0.67 0.508841
Target:  5'- -cGUCGG-GGCGguccAGCGCCCaGGcCAGc -3'
miRNA:   3'- caCAGCUaCCGCa---UCGCGGG-CC-GUCc -5'
19215 5' -59 NC_004684.1 + 14094 0.67 0.508841
Target:  5'- gGUGaccgGGUGGUGUGGCucagcCCCGGUGGGu -3'
miRNA:   3'- -CACag--CUACCGCAUCGc----GGGCCGUCC- -5'
19215 5' -59 NC_004684.1 + 24496 0.67 0.508841
Target:  5'- -cGUCaGGUGGCGgucucGGUGCCagaGGCcGGg -3'
miRNA:   3'- caCAG-CUACCGCa----UCGCGGg--CCGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.