miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19216 3' -53.4 NC_004684.1 + 28014 0.66 0.850592
Target:  5'- -aGGUCGAuGGCcugGACguGACaCCGGCa -3'
miRNA:   3'- gaCUAGUUuCCG---CUGguCUGcGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 59050 0.66 0.84974
Target:  5'- -cGAUCcuugcagAAAGGCcagGGCCAGGgucaGCCAGUa -3'
miRNA:   3'- gaCUAG-------UUUCCG---CUGGUCUg---CGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 24789 0.66 0.841971
Target:  5'- gCUGGUCGAua-CGGCCaAGGCGgUCGGCa -3'
miRNA:   3'- -GACUAGUUuccGCUGG-UCUGC-GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 31093 0.66 0.841971
Target:  5'- ----cCGAGGGCuGGCaGGACGCCGcGCa -3'
miRNA:   3'- gacuaGUUUCCG-CUGgUCUGCGGU-CG- -5'
19216 3' -53.4 NC_004684.1 + 16333 0.66 0.841971
Target:  5'- aUGAccagCGAGGaGCGGCU-GGCGCUGGCc -3'
miRNA:   3'- gACUa---GUUUC-CGCUGGuCUGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 33646 0.66 0.841971
Target:  5'- -aGGUCGGGGGCGuCCuGGcCGCgCuGCg -3'
miRNA:   3'- gaCUAGUUUCCGCuGGuCU-GCG-GuCG- -5'
19216 3' -53.4 NC_004684.1 + 15872 0.66 0.841971
Target:  5'- cCUGGa-GAAGGUGucccGCCAGGCGgCGGUg -3'
miRNA:   3'- -GACUagUUUCCGC----UGGUCUGCgGUCG- -5'
19216 3' -53.4 NC_004684.1 + 45531 0.66 0.839341
Target:  5'- gCUGGUUuccugugcggccuuGcGGGCGGCCauGGAUGcCCGGCu -3'
miRNA:   3'- -GACUAG--------------UuUCCGCUGG--UCUGC-GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 62334 0.66 0.836692
Target:  5'- -gGAUCAGgaucgugggagcgccGGGUG-CCAGACGCguGg -3'
miRNA:   3'- gaCUAGUU---------------UCCGCuGGUCUGCGguCg -5'
19216 3' -53.4 NC_004684.1 + 42488 0.66 0.836692
Target:  5'- gCUGAUCGcggcGGCGGCCAucucguagccacgauGGCG-CGGCu -3'
miRNA:   3'- -GACUAGUuu--CCGCUGGU---------------CUGCgGUCG- -5'
19216 3' -53.4 NC_004684.1 + 9559 0.66 0.833129
Target:  5'- -cGggUAccGGCGGCCAGcacCGCCGGg -3'
miRNA:   3'- gaCuaGUuuCCGCUGGUCu--GCGGUCg -5'
19216 3' -53.4 NC_004684.1 + 55139 0.66 0.833129
Target:  5'- aUGGUCAuguacGUGACCGGAuCGCC-GCc -3'
miRNA:   3'- gACUAGUuuc--CGCUGGUCU-GCGGuCG- -5'
19216 3' -53.4 NC_004684.1 + 37535 0.66 0.833129
Target:  5'- gCUGcgCGAuGGUGACCGG-CGCguuggggugCAGCu -3'
miRNA:   3'- -GACuaGUUuCCGCUGGUCuGCG---------GUCG- -5'
19216 3' -53.4 NC_004684.1 + 50787 0.66 0.833129
Target:  5'- gUGAgcaugcaGGAGGCcACCagcAGACGCUGGCg -3'
miRNA:   3'- gACUag-----UUUCCGcUGG---UCUGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 8918 0.66 0.833129
Target:  5'- cCUGG-CAGAucGGCGACgAGgauguGCGCCuGCa -3'
miRNA:   3'- -GACUaGUUU--CCGCUGgUC-----UGCGGuCG- -5'
19216 3' -53.4 NC_004684.1 + 10611 0.66 0.833129
Target:  5'- ---cUCAcAGGUugGACCAGcCGUCGGCg -3'
miRNA:   3'- gacuAGUuUCCG--CUGGUCuGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 63866 0.66 0.833129
Target:  5'- gUGcgCGGuGGCGGCCuucaucGGGC-CCAGCg -3'
miRNA:   3'- gACuaGUUuCCGCUGG------UCUGcGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 25862 0.66 0.833129
Target:  5'- cCUGuUCAAcGGCcucGGCCAGgccgggcagaACGUCAGCg -3'
miRNA:   3'- -GACuAGUUuCCG---CUGGUC----------UGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 7963 0.66 0.833129
Target:  5'- gUGggC-AAGGCcGCCAGGCgGCCGuGCg -3'
miRNA:   3'- gACuaGuUUCCGcUGGUCUG-CGGU-CG- -5'
19216 3' -53.4 NC_004684.1 + 31341 0.67 0.827722
Target:  5'- gCUGAUcCAGgugcccggugucugcAcGGCGGUCAGAUGCCGGUa -3'
miRNA:   3'- -GACUA-GUU---------------U-CCGCUGGUCUGCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.