Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19216 | 5' | -52.3 | NC_004684.1 | + | 543 | 0.68 | 0.780811 |
Target: 5'- -gGCgaaaGGCCUGGaggGCACCgggUUUGAcgAGGa -3' miRNA: 3'- gaCGa---CCGGACCa--UGUGG---AAACU--UCC- -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 1997 | 0.75 | 0.431978 |
Target: 5'- aCUGCUGGCCUGG-GCGCUggaccgccccgacgUUGAccAGGc -3' miRNA: 3'- -GACGACCGGACCaUGUGGa-------------AACU--UCC- -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 2079 | 0.72 | 0.574207 |
Target: 5'- -cGCUGGCCgUGGUGCACagc--GAGGc -3' miRNA: 3'- gaCGACCGG-ACCAUGUGgaaacUUCC- -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 3257 | 0.72 | 0.596309 |
Target: 5'- gCUGCUGGCCUGGccggACAUCgugGAc-- -3' miRNA: 3'- -GACGACCGGACCa---UGUGGaaaCUucc -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 4282 | 0.66 | 0.8946 |
Target: 5'- -aGCaagGGCCUGGUGCugCcacacGAguGGGa -3' miRNA: 3'- gaCGa--CCGGACCAUGugGaaa--CU--UCC- -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 5633 | 0.68 | 0.790805 |
Target: 5'- -aGCUGgacGCCUGGUuCGCCcgUGgcGGa -3' miRNA: 3'- gaCGAC---CGGACCAuGUGGaaACuuCC- -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 10925 | 0.66 | 0.887284 |
Target: 5'- -aGCaguuUGGCCUcGUGCuccagGCCUUUGAGGa -3' miRNA: 3'- gaCG----ACCGGAcCAUG-----UGGAAACUUCc -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 14426 | 0.66 | 0.904385 |
Target: 5'- aCUGCUGGCCaaggggucaacgaggUGGUgaccgaacgcaGCGCCUgccUGGAa- -3' miRNA: 3'- -GACGACCGG---------------ACCA-----------UGUGGAa--ACUUcc -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 14562 | 0.73 | 0.505092 |
Target: 5'- -cGCUGGacaCCUGGUGCGCCggggccaccgaGGAGGa -3' miRNA: 3'- gaCGACC---GGACCAUGUGGaaa--------CUUCC- -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 15272 | 0.73 | 0.541437 |
Target: 5'- aCUGgaGGCCUgcgcGGUGCACCUgcu-GGGc -3' miRNA: 3'- -GACgaCCGGA----CCAUGUGGAaacuUCC- -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 21943 | 0.68 | 0.810272 |
Target: 5'- uCUGC-GGCCUGGUgaugACGCCa-UGAGcGGc -3' miRNA: 3'- -GACGaCCGGACCA----UGUGGaaACUU-CC- -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 23410 | 0.7 | 0.696169 |
Target: 5'- -aGCUGGCCgGGUACGCCc------- -3' miRNA: 3'- gaCGACCGGaCCAUGUGGaaacuucc -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 24902 | 0.66 | 0.879701 |
Target: 5'- -cGUUGGCCUGGUcguuggacaggAUGCC---GAAGGu -3' miRNA: 3'- gaCGACCGGACCA-----------UGUGGaaaCUUCC- -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 25965 | 0.69 | 0.739376 |
Target: 5'- -aGCUGGCCaagcUGGUGCGC----GAAGGc -3' miRNA: 3'- gaCGACCGG----ACCAUGUGgaaaCUUCC- -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 26190 | 0.73 | 0.541437 |
Target: 5'- -cGCUGGCguCUGGU-CGCCUUUGAu-- -3' miRNA: 3'- gaCGACCG--GACCAuGUGGAAACUucc -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 32881 | 0.71 | 0.636356 |
Target: 5'- -aGCUGuCCUGGUACACCgcccaauuuucGggGGu -3' miRNA: 3'- gaCGACcGGACCAUGUGGaaa--------CuuCC- -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 35998 | 0.7 | 0.696169 |
Target: 5'- -cGUUGGCCUGGUugGCgagcgUGAuGGu -3' miRNA: 3'- gaCGACCGGACCAugUGgaa--ACUuCC- -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 36121 | 0.77 | 0.330006 |
Target: 5'- cCUGCUGGCCUucgccACACCUgUGggGGc -3' miRNA: 3'- -GACGACCGGAcca--UGUGGAaACuuCC- -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 41233 | 1.1 | 0.001999 |
Target: 5'- gCUGCUGGCCUGGUACACCUUUGAAGGc -3' miRNA: 3'- -GACGACCGGACCAUGUGGAAACUUCC- -5' |
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19216 | 5' | -52.3 | NC_004684.1 | + | 41522 | 0.67 | 0.863758 |
Target: 5'- uCUGCccGGCCUGGccgAgGCCgUUGAacAGGc -3' miRNA: 3'- -GACGa-CCGGACCa--UgUGGaAACU--UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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