miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19217 3' -63.2 NC_004684.1 + 32935 0.66 0.394088
Target:  5'- gGGUgccuCGGGCaggauGGGCCGCUCGGgcagCAc -3'
miRNA:   3'- gCCG----GCCCGgu---UCCGGUGGGCCaa--GU- -5'
19217 3' -63.2 NC_004684.1 + 23836 0.66 0.394088
Target:  5'- gCGGCUGgacaaGGCCAAGGCCgagugggagGCCCaGUg-- -3'
miRNA:   3'- -GCCGGC-----CCGGUUCCGG---------UGGGcCAagu -5'
19217 3' -63.2 NC_004684.1 + 15498 0.66 0.394088
Target:  5'- uGGaguuCCuGGaCAAGGCCGCCCGGggCc -3'
miRNA:   3'- gCC----GGcCCgGUUCCGGUGGGCCaaGu -5'
19217 3' -63.2 NC_004684.1 + 31936 0.66 0.385639
Target:  5'- cCGGCCcGGCCGcaacGGUCGCCCGcugUCc -3'
miRNA:   3'- -GCCGGcCCGGUu---CCGGUGGGCca-AGu -5'
19217 3' -63.2 NC_004684.1 + 12993 0.66 0.380627
Target:  5'- aGcGCCGGGCCGGGuggauuaugucccccGaCgCGCCCGGUUa- -3'
miRNA:   3'- gC-CGGCCCGGUUC---------------C-G-GUGGGCCAAgu -5'
19217 3' -63.2 NC_004684.1 + 745 0.66 0.37731
Target:  5'- gGGCCGccGCCGAGGCCAUCgUGGc--- -3'
miRNA:   3'- gCCGGCc-CGGUUCCGGUGG-GCCaagu -5'
19217 3' -63.2 NC_004684.1 + 36751 0.66 0.37731
Target:  5'- cCGGCgcugaCGccGCCAGGGCCgcGCCCGGUg-- -3'
miRNA:   3'- -GCCG-----GCc-CGGUUCCGG--UGGGCCAagu -5'
19217 3' -63.2 NC_004684.1 + 46115 0.66 0.37731
Target:  5'- aCGGCCGGGCgCGcGuGCCggggugguugACCUGGcgCAc -3'
miRNA:   3'- -GCCGGCCCG-GUuC-CGG----------UGGGCCaaGU- -5'
19217 3' -63.2 NC_004684.1 + 64882 0.66 0.37731
Target:  5'- aGuGCCGGGCgucguUGAGGCCGCCC---UCAu -3'
miRNA:   3'- gC-CGGCCCG-----GUUCCGGUGGGccaAGU- -5'
19217 3' -63.2 NC_004684.1 + 67055 0.66 0.37731
Target:  5'- uGGuuGcccGCCAacaccucguuGGGCCGCCCGGUc-- -3'
miRNA:   3'- gCCggCc--CGGU----------UCCGGUGGGCCAagu -5'
19217 3' -63.2 NC_004684.1 + 5945 0.66 0.37731
Target:  5'- cCGGgCGGuCCAAccuGGCCGCgCCGGUgagCGa -3'
miRNA:   3'- -GCCgGCCcGGUU---CCGGUG-GGCCAa--GU- -5'
19217 3' -63.2 NC_004684.1 + 65905 0.66 0.376484
Target:  5'- uGGCCaccaGGGCCGccgcaccGGGCacguccgGCCCGGUcUCGa -3'
miRNA:   3'- gCCGG----CCCGGU-------UCCGg------UGGGCCA-AGU- -5'
19217 3' -63.2 NC_004684.1 + 25712 0.66 0.369104
Target:  5'- cCGcGCUGGguguuGCCGAGGUCGgCCCGGccUUCGu -3'
miRNA:   3'- -GC-CGGCC-----CGGUUCCGGU-GGGCC--AAGU- -5'
19217 3' -63.2 NC_004684.1 + 21427 0.66 0.369104
Target:  5'- uGGCCGaGGUCAuggAGGCCGCCgucgaguacgUGGUg-- -3'
miRNA:   3'- gCCGGC-CCGGU---UCCGGUGG----------GCCAagu -5'
19217 3' -63.2 NC_004684.1 + 28779 0.66 0.369104
Target:  5'- aGGUCaGcGGCau--GCCACCCGGUUCc -3'
miRNA:   3'- gCCGG-C-CCGguucCGGUGGGCCAAGu -5'
19217 3' -63.2 NC_004684.1 + 21840 0.66 0.36102
Target:  5'- -aGCCGGGCauccauGGCCGCCCGc---- -3'
miRNA:   3'- gcCGGCCCGguu---CCGGUGGGCcaagu -5'
19217 3' -63.2 NC_004684.1 + 57621 0.66 0.36102
Target:  5'- gCGGUacGGCCA--GCCACCCGGUg-- -3'
miRNA:   3'- -GCCGgcCCGGUucCGGUGGGCCAagu -5'
19217 3' -63.2 NC_004684.1 + 66634 0.66 0.36102
Target:  5'- gCGGCCuugguGGCCAcgauGGCCucggcggcgGCCCGG-UCAc -3'
miRNA:   3'- -GCCGGc----CCGGUu---CCGG---------UGGGCCaAGU- -5'
19217 3' -63.2 NC_004684.1 + 13179 0.66 0.36102
Target:  5'- uGGCCGaccucGGCCccgagcAGGCCGCC-GGUUUg -3'
miRNA:   3'- gCCGGC-----CCGGu-----UCCGGUGGgCCAAGu -5'
19217 3' -63.2 NC_004684.1 + 3517 0.66 0.36102
Target:  5'- -cGCUGGGCCcgaugAAGGCCGCCaCGcGcgCAc -3'
miRNA:   3'- gcCGGCCCGG-----UUCCGGUGG-GC-CaaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.