miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19217 5' -55.5 NC_004684.1 + 62465 0.66 0.771319
Target:  5'- cUCCGGGa-GGUGGCcGUuggCGACCg-- -3'
miRNA:   3'- -AGGCCCggCUACCGaUAa--GCUGGaug -5'
19217 5' -55.5 NC_004684.1 + 24649 0.66 0.765321
Target:  5'- uUCCGGcgcgcacugcacuucGCCGAcGGCggugagGUUCcaGGCCUGCc -3'
miRNA:   3'- -AGGCC---------------CGGCUaCCGa-----UAAG--CUGGAUG- -5'
19217 5' -55.5 NC_004684.1 + 42987 0.66 0.761296
Target:  5'- cCUGGGCCuucuUGGUg--UCGGCCUuCa -3'
miRNA:   3'- aGGCCCGGcu--ACCGauaAGCUGGAuG- -5'
19217 5' -55.5 NC_004684.1 + 52317 0.66 0.761296
Target:  5'- aCCGcGCCGAUaaGGCcg-UCGACCUc- -3'
miRNA:   3'- aGGCcCGGCUA--CCGauaAGCUGGAug -5'
19217 5' -55.5 NC_004684.1 + 57902 0.66 0.761296
Target:  5'- gCCGGGCUGAaggUGGCcgGgcUGACCg-- -3'
miRNA:   3'- aGGCCCGGCU---ACCGa-UaaGCUGGaug -5'
19217 5' -55.5 NC_004684.1 + 28082 0.66 0.751144
Target:  5'- gCCGGGCCGcc-GCg---CGACCcGCa -3'
miRNA:   3'- aGGCCCGGCuacCGauaaGCUGGaUG- -5'
19217 5' -55.5 NC_004684.1 + 54645 0.66 0.751144
Target:  5'- -gCGGGCCaaGAgGGCg--UCGACCUcgGCc -3'
miRNA:   3'- agGCCCGG--CUaCCGauaAGCUGGA--UG- -5'
19217 5' -55.5 NC_004684.1 + 19266 0.66 0.751144
Target:  5'- aCCGGGCCGAccgGGacggUgGACCcgaUGCa -3'
miRNA:   3'- aGGCCCGGCUa--CCgauaAgCUGG---AUG- -5'
19217 5' -55.5 NC_004684.1 + 29737 0.66 0.740874
Target:  5'- aCCGGGUCGAUGcCUGaccgggCGGCCa-- -3'
miRNA:   3'- aGGCCCGGCUACcGAUaa----GCUGGaug -5'
19217 5' -55.5 NC_004684.1 + 9913 0.66 0.734661
Target:  5'- gUCCGGGCUGAccgaggcggugauugUGGCcgGgcUGACCaUGCu -3'
miRNA:   3'- -AGGCCCGGCU---------------ACCGa-UaaGCUGG-AUG- -5'
19217 5' -55.5 NC_004684.1 + 57249 0.67 0.720026
Target:  5'- cCUGGGCgGgcGGCaccgUCGGCCcGCa -3'
miRNA:   3'- aGGCCCGgCuaCCGaua-AGCUGGaUG- -5'
19217 5' -55.5 NC_004684.1 + 9714 0.67 0.720026
Target:  5'- gCCuGGCCGAUGGCc-----ACCUGCu -3'
miRNA:   3'- aGGcCCGGCUACCGauaagcUGGAUG- -5'
19217 5' -55.5 NC_004684.1 + 40707 0.67 0.709469
Target:  5'- gCUGGGCggCGGUGGCcgGgaCGACCaGCg -3'
miRNA:   3'- aGGCCCG--GCUACCGa-UaaGCUGGaUG- -5'
19217 5' -55.5 NC_004684.1 + 49229 0.67 0.698839
Target:  5'- gCCGGGCCGGgcgucGGCacgUCGcCCcACa -3'
miRNA:   3'- aGGCCCGGCUa----CCGauaAGCuGGaUG- -5'
19217 5' -55.5 NC_004684.1 + 37517 0.67 0.688145
Target:  5'- aCCGGGCUGAaGGCa---UGAgCUGCg -3'
miRNA:   3'- aGGCCCGGCUaCCGauaaGCUgGAUG- -5'
19217 5' -55.5 NC_004684.1 + 874 0.67 0.688145
Target:  5'- gCCGGGCCGc--GCUGaaggCGGCCcGCg -3'
miRNA:   3'- aGGCCCGGCuacCGAUaa--GCUGGaUG- -5'
19217 5' -55.5 NC_004684.1 + 606 0.67 0.688145
Target:  5'- cUCCGGGCCGccUGacCUGgaCGACCUGg -3'
miRNA:   3'- -AGGCCCGGCu-ACc-GAUaaGCUGGAUg -5'
19217 5' -55.5 NC_004684.1 + 52116 0.67 0.686
Target:  5'- gUCGGGCUGGUGGCcaccagggugUUGGCCa-- -3'
miRNA:   3'- aGGCCCGGCUACCGaua-------AGCUGGaug -5'
19217 5' -55.5 NC_004684.1 + 16313 0.67 0.6774
Target:  5'- aCCGGGCCGccGGUgAUguaaUGACCaGCg -3'
miRNA:   3'- aGGCCCGGCuaCCGaUAa---GCUGGaUG- -5'
19217 5' -55.5 NC_004684.1 + 27841 0.67 0.6774
Target:  5'- gUCCGGuGCUGuccGGCgaggAUUaGGCCUGCa -3'
miRNA:   3'- -AGGCC-CGGCua-CCGa---UAAgCUGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.