miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19218 3' -61.2 NC_004684.1 + 219 0.66 0.479837
Target:  5'- cGCaCGUCC-GGCaccauGCCgUACAUCGCCGc -3'
miRNA:   3'- cCG-GCGGGaCCGg----UGG-AUGUAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 15816 0.66 0.479837
Target:  5'- cGCCGagcgaCCCggUGGCgCGCg-GCAUCGCCAc -3'
miRNA:   3'- cCGGC-----GGG--ACCG-GUGgaUGUAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 42865 0.66 0.479837
Target:  5'- gGGCCaaCCaGGCCGCC-GCA-CGCCc -3'
miRNA:   3'- -CCGGcgGGaCCGGUGGaUGUaGCGGu -5'
19218 3' -61.2 NC_004684.1 + 10248 0.66 0.479837
Target:  5'- cGCCGCCauggaGGCgaACCaGCcgCGCCAg -3'
miRNA:   3'- cCGGCGGga---CCGg-UGGaUGuaGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 57101 0.66 0.479837
Target:  5'- cGGgCGaCCuCUGGCgcgaCACCgGCGUCGCUg -3'
miRNA:   3'- -CCgGC-GG-GACCG----GUGGaUGUAGCGGu -5'
19218 3' -61.2 NC_004684.1 + 22221 0.66 0.479837
Target:  5'- uGGCCGacuucauggaCCUGGaggaCGCCgucgACuUCGCCGa -3'
miRNA:   3'- -CCGGCg---------GGACCg---GUGGa---UGuAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 6040 0.66 0.477901
Target:  5'- cGCCaccaccauucaCCUGGCCgccACCUACGcCGCCGa -3'
miRNA:   3'- cCGGcg---------GGACCGG---UGGAUGUaGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 41382 0.66 0.470199
Target:  5'- cGGCaCGUugaaCCcGGCCGCCgcCAggagCGCCAg -3'
miRNA:   3'- -CCG-GCG----GGaCCGGUGGauGUa---GCGGU- -5'
19218 3' -61.2 NC_004684.1 + 49065 0.66 0.470199
Target:  5'- cGGCCagGUgCUcGUCGCCcACGUCGCCGc -3'
miRNA:   3'- -CCGG--CGgGAcCGGUGGaUGUAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 24513 0.66 0.470199
Target:  5'- gGGCCGCgCguucggcgGuGCCAUCUACGgcggugUGCCGg -3'
miRNA:   3'- -CCGGCGgGa-------C-CGGUGGAUGUa-----GCGGU- -5'
19218 3' -61.2 NC_004684.1 + 22154 0.66 0.470199
Target:  5'- uGGCUGCCg-GGCCugACCaGCAccaagCGCCGc -3'
miRNA:   3'- -CCGGCGGgaCCGG--UGGaUGUa----GCGGU- -5'
19218 3' -61.2 NC_004684.1 + 16118 0.66 0.470199
Target:  5'- uGGaCGCCUacGCCGCCaGCAUCGgCAu -3'
miRNA:   3'- -CCgGCGGGacCGGUGGaUGUAGCgGU- -5'
19218 3' -61.2 NC_004684.1 + 65 0.66 0.470199
Target:  5'- aGCUGCUCgacaUGGCCucgACCaaguCAUCGCCGu -3'
miRNA:   3'- cCGGCGGG----ACCGG---UGGau--GUAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 32959 0.66 0.470199
Target:  5'- cGCuCGCgCUGGCCaACCU-CGcCGCCu -3'
miRNA:   3'- cCG-GCGgGACCGG-UGGAuGUaGCGGu -5'
19218 3' -61.2 NC_004684.1 + 39321 0.66 0.470199
Target:  5'- cGGCgGCCC-GGCCACac----CGCCGg -3'
miRNA:   3'- -CCGgCGGGaCCGGUGgauguaGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 61459 0.66 0.46066
Target:  5'- uGGaCCGCCCggUGGCCAgCgcgGCca-GCCGg -3'
miRNA:   3'- -CC-GGCGGG--ACCGGUgGa--UGuagCGGU- -5'
19218 3' -61.2 NC_004684.1 + 14488 0.66 0.46066
Target:  5'- cGCCGCCgugCUGGCCGgacgcuCCUGgGUgcaUGCCAc -3'
miRNA:   3'- cCGGCGG---GACCGGU------GGAUgUA---GCGGU- -5'
19218 3' -61.2 NC_004684.1 + 64413 0.66 0.46066
Target:  5'- uGGCCucgaaCCCguUGGCCACCcgcaacaGCAgcgCGCCGa -3'
miRNA:   3'- -CCGGc----GGG--ACCGGUGGa------UGUa--GCGGU- -5'
19218 3' -61.2 NC_004684.1 + 60983 0.66 0.46066
Target:  5'- cGCCGCCgagCUGuaCACCUcggccaACuUCGCCAa -3'
miRNA:   3'- cCGGCGG---GACcgGUGGA------UGuAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 51623 0.66 0.459712
Target:  5'- uGGCCGCgCUcGGCgCACCUuucgguguacgcgGCcaGUCGCUg -3'
miRNA:   3'- -CCGGCGgGA-CCG-GUGGA-------------UG--UAGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.