miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19218 3' -61.2 NC_004684.1 + 20606 0.66 0.423574
Target:  5'- cGCCGagcgucuaCCUGGgCACCgGCGagCGCCAg -3'
miRNA:   3'- cCGGCg-------GGACCgGUGGaUGUa-GCGGU- -5'
19218 3' -61.2 NC_004684.1 + 56297 0.66 0.441897
Target:  5'- aGCCcgGCCCUGGCgCGCCgggACGUggagaccgCGCUg -3'
miRNA:   3'- cCGG--CGGGACCG-GUGGa--UGUA--------GCGGu -5'
19218 3' -61.2 NC_004684.1 + 44527 0.66 0.450288
Target:  5'- uGGCCGCCgUGGUgGCCcggACgaacccgGUCGgCAg -3'
miRNA:   3'- -CCGGCGGgACCGgUGGa--UG-------UAGCgGU- -5'
19218 3' -61.2 NC_004684.1 + 27940 0.66 0.441897
Target:  5'- -aCCGCCggagCUGG-CACCguggUACGUCGCCGa -3'
miRNA:   3'- ccGGCGG----GACCgGUGG----AUGUAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 2002 0.66 0.441897
Target:  5'- uGGCCuggGCgCUGGaCCGCCccgACGUUGaCCAg -3'
miRNA:   3'- -CCGG---CGgGACC-GGUGGa--UGUAGC-GGU- -5'
19218 3' -61.2 NC_004684.1 + 48923 0.66 0.423574
Target:  5'- gGGuCCGCa--GGCCcgGCCU-CGUCGCCGa -3'
miRNA:   3'- -CC-GGCGggaCCGG--UGGAuGUAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 6023 0.66 0.441897
Target:  5'- cGGUgGCCUUuaGGCCGCCaGCGccUCGCg- -3'
miRNA:   3'- -CCGgCGGGA--CCGGUGGaUGU--AGCGgu -5'
19218 3' -61.2 NC_004684.1 + 10248 0.66 0.479837
Target:  5'- cGCCGCCauggaGGCgaACCaGCcgCGCCAg -3'
miRNA:   3'- cCGGCGGga---CCGg-UGGaUGuaGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 18415 0.66 0.432679
Target:  5'- cGGCgGCCCggcgGGCgCACCgGCG--GCCGa -3'
miRNA:   3'- -CCGgCGGGa---CCG-GUGGaUGUagCGGU- -5'
19218 3' -61.2 NC_004684.1 + 36392 0.66 0.432679
Target:  5'- aGGCaCGCUCgcgGGCCuACCUcCucgagCGCCAc -3'
miRNA:   3'- -CCG-GCGGGa--CCGG-UGGAuGua---GCGGU- -5'
19218 3' -61.2 NC_004684.1 + 19319 0.66 0.423574
Target:  5'- aGGCCGCauacGCCGCCgcCGUgGCCGa -3'
miRNA:   3'- -CCGGCGggacCGGUGGauGUAgCGGU- -5'
19218 3' -61.2 NC_004684.1 + 51473 0.66 0.441897
Target:  5'- aGGCC-CCCaggaUGGCgACCUGCGgauggcacCGCCc -3'
miRNA:   3'- -CCGGcGGG----ACCGgUGGAUGUa-------GCGGu -5'
19218 3' -61.2 NC_004684.1 + 11791 0.66 0.441897
Target:  5'- gGGCCGaCCaGGCCACCguggagaaggGCGcgagcgCGCCGc -3'
miRNA:   3'- -CCGGCgGGaCCGGUGGa---------UGUa-----GCGGU- -5'
19218 3' -61.2 NC_004684.1 + 52748 0.66 0.423574
Target:  5'- aGGUCGUCgUGGCCGCUggcGCAgUCGUUg -3'
miRNA:   3'- -CCGGCGGgACCGGUGGa--UGU-AGCGGu -5'
19218 3' -61.2 NC_004684.1 + 6318 0.66 0.432679
Target:  5'- aGGCCGUaCUUGGCCgagaggaucaugACCUugGCGUUGuCCAu -3'
miRNA:   3'- -CCGGCG-GGACCGG------------UGGA--UGUAGC-GGU- -5'
19218 3' -61.2 NC_004684.1 + 24185 0.66 0.432679
Target:  5'- cGCCGCCCaaaauGCCgguGCCUGCggUGCCc -3'
miRNA:   3'- cCGGCGGGac---CGG---UGGAUGuaGCGGu -5'
19218 3' -61.2 NC_004684.1 + 25361 0.66 0.423574
Target:  5'- cGGCgGCCUgaUGGaCCcggucagcGCCUACGcCGCCGc -3'
miRNA:   3'- -CCGgCGGG--ACC-GG--------UGGAUGUaGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 10498 0.66 0.445615
Target:  5'- cGGCCGacgcaCUgGGCCGCCgACGgucagcgcgcaccgcUCGCCGg -3'
miRNA:   3'- -CCGGCg----GGaCCGGUGGaUGU---------------AGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 2702 0.66 0.423574
Target:  5'- -cCCGgCCUGGCCgguGCCggggGCAagugCGCCAc -3'
miRNA:   3'- ccGGCgGGACCGG---UGGa---UGUa---GCGGU- -5'
19218 3' -61.2 NC_004684.1 + 59437 0.66 0.432679
Target:  5'- uGGCgGCCUUGcCCACCggugugCGCCGg -3'
miRNA:   3'- -CCGgCGGGACcGGUGGaugua-GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.