miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19218 3' -61.2 NC_004684.1 + 42335 1.1 0.000274
Target:  5'- cGGCCGCCCUGGCCACCUACAUCGCCAa -3'
miRNA:   3'- -CCGGCGGGACCGGUGGAUGUAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 5930 0.81 0.044026
Target:  5'- uGGCCGCgCUGGCCACCgggcgguccaaccugGCcgCGCCGg -3'
miRNA:   3'- -CCGGCGgGACCGGUGGa--------------UGuaGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 58979 0.8 0.049072
Target:  5'- uGCCGCgCUGGUUACCguucgGCAUCGCCGg -3'
miRNA:   3'- cCGGCGgGACCGGUGGa----UGUAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 2368 0.79 0.05795
Target:  5'- uGGCCGCCaucgacaUGGCCACCU---UCGCCGg -3'
miRNA:   3'- -CCGGCGGg------ACCGGUGGAuguAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 1492 0.78 0.070281
Target:  5'- cGGCgGCCCuggUGGCCaACCUGCG-CGCCGc -3'
miRNA:   3'- -CCGgCGGG---ACCGG-UGGAUGUaGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 1041 0.78 0.072237
Target:  5'- cGUCGCCCUGGCCGCCcgccccgGCGUCaCCGg -3'
miRNA:   3'- cCGGCGGGACCGGUGGa------UGUAGcGGU- -5'
19218 3' -61.2 NC_004684.1 + 20220 0.78 0.072237
Target:  5'- cGGCgGCCCUGGCCGCCgcUACggUGCUc -3'
miRNA:   3'- -CCGgCGGGACCGGUGG--AUGuaGCGGu -5'
19218 3' -61.2 NC_004684.1 + 54907 0.77 0.080596
Target:  5'- aGGCgGCCCUGGUgGCCgaGCGUCGCa- -3'
miRNA:   3'- -CCGgCGGGACCGgUGGa-UGUAGCGgu -5'
19218 3' -61.2 NC_004684.1 + 33652 0.77 0.085115
Target:  5'- gGGgCGUCCUGGCCGCgCUGCGUCgaguaguucggGCCAc -3'
miRNA:   3'- -CCgGCGGGACCGGUG-GAUGUAG-----------CGGU- -5'
19218 3' -61.2 NC_004684.1 + 41351 0.77 0.087464
Target:  5'- cGCCGCCCUGGCCGCCU----UGCUu -3'
miRNA:   3'- cCGGCGGGACCGGUGGAuguaGCGGu -5'
19218 3' -61.2 NC_004684.1 + 3489 0.77 0.089875
Target:  5'- gGGCCGCaCCgUGGCCGCCaggACGccgcaaUCGCCGa -3'
miRNA:   3'- -CCGGCG-GG-ACCGGUGGa--UGU------AGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 15097 0.76 0.092348
Target:  5'- uGGCCGCCCUGGagGCCgACcUUGCCGu -3'
miRNA:   3'- -CCGGCGGGACCggUGGaUGuAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 42418 0.76 0.092348
Target:  5'- uGCCGCCCUGGgaCACCggaaGCGUgGCCGg -3'
miRNA:   3'- cCGGCGGGACCg-GUGGa---UGUAgCGGU- -5'
19218 3' -61.2 NC_004684.1 + 26319 0.75 0.108597
Target:  5'- aGGCCGCCg-GGCCGCCg--AUUGCCGa -3'
miRNA:   3'- -CCGGCGGgaCCGGUGGaugUAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 484 0.75 0.108597
Target:  5'- uGGCCGCCaaGGCCgcGCCgaagGCcgCGCCGa -3'
miRNA:   3'- -CCGGCGGgaCCGG--UGGa---UGuaGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 51997 0.75 0.120881
Target:  5'- uGGCCGCCCcgaUGGCgGCCU-CGUaGCCGa -3'
miRNA:   3'- -CCGGCGGG---ACCGgUGGAuGUAgCGGU- -5'
19218 3' -61.2 NC_004684.1 + 4253 0.75 0.120881
Target:  5'- aGCCGCaCUcGGCCACCaccacCAUCGCCAg -3'
miRNA:   3'- cCGGCG-GGaCCGGUGGau---GUAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 7542 0.75 0.124148
Target:  5'- uGGCCGCCgUGGCggcguucugguuCGCCUACAccggcaccgCGCCAu -3'
miRNA:   3'- -CCGGCGGgACCG------------GUGGAUGUa--------GCGGU- -5'
19218 3' -61.2 NC_004684.1 + 39580 0.74 0.127159
Target:  5'- aGGCCGCCCUcaacagcugcucgGGCCACCacGCAgCGCUc -3'
miRNA:   3'- -CCGGCGGGA-------------CCGGUGGa-UGUaGCGGu -5'
19218 3' -61.2 NC_004684.1 + 11950 0.74 0.13093
Target:  5'- uGGUCGCCagcCUGG-CACCUGCggCGCCAc -3'
miRNA:   3'- -CCGGCGG---GACCgGUGGAUGuaGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.