miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19218 3' -61.2 NC_004684.1 + 47806 0.66 0.451225
Target:  5'- cGGCCGCCggaCUGGgCAggUGCAcgaCGCCAg -3'
miRNA:   3'- -CCGGCGG---GACCgGUggAUGUa--GCGGU- -5'
19218 3' -61.2 NC_004684.1 + 22861 0.66 0.451225
Target:  5'- gGGuUCGUCCgGGCCACC-ACGgcgGCCAa -3'
miRNA:   3'- -CC-GGCGGGaCCGGUGGaUGUag-CGGU- -5'
19218 3' -61.2 NC_004684.1 + 752 0.66 0.451225
Target:  5'- --aCGCCCUGGCgGCgCUccuggACAcCGCCGa -3'
miRNA:   3'- ccgGCGGGACCGgUG-GA-----UGUaGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 28894 0.66 0.451225
Target:  5'- cGGCgCGCCgUGGCgACCgccGCugAUCGaCCGg -3'
miRNA:   3'- -CCG-GCGGgACCGgUGGa--UG--UAGC-GGU- -5'
19218 3' -61.2 NC_004684.1 + 57062 0.66 0.451225
Target:  5'- gGGUCGa--UGGCgGCCUGCGUUGCg- -3'
miRNA:   3'- -CCGGCgggACCGgUGGAUGUAGCGgu -5'
19218 3' -61.2 NC_004684.1 + 25401 0.66 0.451225
Target:  5'- uGUCGCCagcGGCCACCgcgcggGCAUagaaCGCCu -3'
miRNA:   3'- cCGGCGGga-CCGGUGGa-----UGUA----GCGGu -5'
19218 3' -61.2 NC_004684.1 + 44527 0.66 0.450288
Target:  5'- uGGCCGCCgUGGUgGCCcggACgaacccgGUCGgCAg -3'
miRNA:   3'- -CCGGCGGgACCGgUGGa--UG-------UAGCgGU- -5'
19218 3' -61.2 NC_004684.1 + 10498 0.66 0.445615
Target:  5'- cGGCCGacgcaCUgGGCCGCCgACGgucagcgcgcaccgcUCGCCGg -3'
miRNA:   3'- -CCGGCg----GGaCCGGUGGaUGU---------------AGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 56297 0.66 0.441897
Target:  5'- aGCCcgGCCCUGGCgCGCCgggACGUggagaccgCGCUg -3'
miRNA:   3'- cCGG--CGGGACCG-GUGGa--UGUA--------GCGGu -5'
19218 3' -61.2 NC_004684.1 + 27940 0.66 0.441897
Target:  5'- -aCCGCCggagCUGG-CACCguggUACGUCGCCGa -3'
miRNA:   3'- ccGGCGG----GACCgGUGG----AUGUAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 51473 0.66 0.441897
Target:  5'- aGGCC-CCCaggaUGGCgACCUGCGgauggcacCGCCc -3'
miRNA:   3'- -CCGGcGGG----ACCGgUGGAUGUa-------GCGGu -5'
19218 3' -61.2 NC_004684.1 + 11791 0.66 0.441897
Target:  5'- gGGCCGaCCaGGCCACCguggagaaggGCGcgagcgCGCCGc -3'
miRNA:   3'- -CCGGCgGGaCCGGUGGa---------UGUa-----GCGGU- -5'
19218 3' -61.2 NC_004684.1 + 57981 0.66 0.441897
Target:  5'- cGGCUGUCCaGGCUgGCCUG-AUCGCUg -3'
miRNA:   3'- -CCGGCGGGaCCGG-UGGAUgUAGCGGu -5'
19218 3' -61.2 NC_004684.1 + 2002 0.66 0.441897
Target:  5'- uGGCCuggGCgCUGGaCCGCCccgACGUUGaCCAg -3'
miRNA:   3'- -CCGG---CGgGACC-GGUGGa--UGUAGC-GGU- -5'
19218 3' -61.2 NC_004684.1 + 11156 0.66 0.441897
Target:  5'- cGGCguugCGCaggCUGaCCGCCUGCAUgCGCCGc -3'
miRNA:   3'- -CCG----GCGg--GACcGGUGGAUGUA-GCGGU- -5'
19218 3' -61.2 NC_004684.1 + 34712 0.66 0.441897
Target:  5'- cGGuuGCCgaGGCCguaGCCaUGCcgcCGCCAg -3'
miRNA:   3'- -CCggCGGgaCCGG---UGG-AUGua-GCGGU- -5'
19218 3' -61.2 NC_004684.1 + 3485 0.66 0.441897
Target:  5'- cGCCGUuacccgguaCCUGGaCCACCUgGCAcCGCUg -3'
miRNA:   3'- cCGGCG---------GGACC-GGUGGA-UGUaGCGGu -5'
19218 3' -61.2 NC_004684.1 + 11211 0.66 0.441897
Target:  5'- cGGgCGCUCgauaGcGCCGCCguCGUCGCCGu -3'
miRNA:   3'- -CCgGCGGGa---C-CGGUGGauGUAGCGGU- -5'
19218 3' -61.2 NC_004684.1 + 6023 0.66 0.441897
Target:  5'- cGGUgGCCUUuaGGCCGCCaGCGccUCGCg- -3'
miRNA:   3'- -CCGgCGGGA--CCGGUGGaUGU--AGCGgu -5'
19218 3' -61.2 NC_004684.1 + 31994 0.66 0.432679
Target:  5'- cGGCgGCUCauccGGCCACC-AgGUUGCCc -3'
miRNA:   3'- -CCGgCGGGa---CCGGUGGaUgUAGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.