miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19218 5' -50.5 NC_004684.1 + 63113 0.66 0.94599
Target:  5'- cGGCGGC-AUUGucuccgGGUAGAGGCcAUUc -3'
miRNA:   3'- -CCGUCGuUGACua----CCGUCUCUGuUAG- -5'
19218 5' -50.5 NC_004684.1 + 55837 0.66 0.94599
Target:  5'- cGGUAGCcGCUG-UGGUugcGGGGCgGGUCg -3'
miRNA:   3'- -CCGUCGuUGACuACCGu--CUCUG-UUAG- -5'
19218 5' -50.5 NC_004684.1 + 49182 0.66 0.94599
Target:  5'- cGGCGGCGGCggcGgcGGCGGccugcucggucGGcCAGUCg -3'
miRNA:   3'- -CCGUCGUUGa--CuaCCGUC-----------UCuGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 53492 0.66 0.94599
Target:  5'- aGGUAgGCGuc-GAUGGCGGGGAagaGGUCc -3'
miRNA:   3'- -CCGU-CGUugaCUACCGUCUCUg--UUAG- -5'
19218 5' -50.5 NC_004684.1 + 21010 0.66 0.940968
Target:  5'- cGGcCAGCGACaucggcaucgUGAUGGCcGAGcACGAc- -3'
miRNA:   3'- -CC-GUCGUUG----------ACUACCGuCUC-UGUUag -5'
19218 5' -50.5 NC_004684.1 + 28079 0.66 0.940968
Target:  5'- cGCGGCAACUGG-GGCGcucguuAGGCGAg- -3'
miRNA:   3'- cCGUCGUUGACUaCCGUc-----UCUGUUag -5'
19218 5' -50.5 NC_004684.1 + 33476 0.66 0.935654
Target:  5'- cGGCGGCGGCUGcgGuggacGCGGcGGCGGc- -3'
miRNA:   3'- -CCGUCGUUGACuaC-----CGUCuCUGUUag -5'
19218 5' -50.5 NC_004684.1 + 29483 0.66 0.935654
Target:  5'- -cCAGCAGCUGGUGGaaCAG-GACu-UCa -3'
miRNA:   3'- ccGUCGUUGACUACC--GUCuCUGuuAG- -5'
19218 5' -50.5 NC_004684.1 + 40713 0.66 0.928888
Target:  5'- cGGCGGUGGCcGGgacgaccagcgcGGCGGGGGCGGUg -3'
miRNA:   3'- -CCGUCGUUGaCUa-----------CCGUCUCUGUUAg -5'
19218 5' -50.5 NC_004684.1 + 48048 0.66 0.924141
Target:  5'- aGGCGGCGcauGCgGAUGGCGGuuucGACc--- -3'
miRNA:   3'- -CCGUCGU---UGaCUACCGUCu---CUGuuag -5'
19218 5' -50.5 NC_004684.1 + 54524 0.67 0.917941
Target:  5'- cGGCGGCGGCcuc-GGCGGuGGCGGccUCg -3'
miRNA:   3'- -CCGUCGUUGacuaCCGUCuCUGUU--AG- -5'
19218 5' -50.5 NC_004684.1 + 61337 0.67 0.917941
Target:  5'- cGGCGGCGua-GGUGGCGGccaGGugAAUg -3'
miRNA:   3'- -CCGUCGUugaCUACCGUC---UCugUUAg -5'
19218 5' -50.5 NC_004684.1 + 48696 0.67 0.90466
Target:  5'- cGGuCAGCGACUGcUGGCu--GAUggUUa -3'
miRNA:   3'- -CC-GUCGUUGACuACCGucuCUGuuAG- -5'
19218 5' -50.5 NC_004684.1 + 8004 0.67 0.90466
Target:  5'- uGCAGCGACUGugccgccgGGCGGuuccaGGACAc-- -3'
miRNA:   3'- cCGUCGUUGACua------CCGUC-----UCUGUuag -5'
19218 5' -50.5 NC_004684.1 + 30183 0.67 0.903268
Target:  5'- cGGCGGCgAGCUGGUGGCcaccaaacccGGCGAg- -3'
miRNA:   3'- -CCGUCG-UUGACUACCGucu-------CUGUUag -5'
19218 5' -50.5 NC_004684.1 + 41257 0.67 0.897584
Target:  5'- aGGCcucCAGCUGGUGuGguGGGGCAAc- -3'
miRNA:   3'- -CCGuc-GUUGACUAC-CguCUCUGUUag -5'
19218 5' -50.5 NC_004684.1 + 1112 0.67 0.897584
Target:  5'- cGGC-GCAAC---UGGCAcGAGAUGGUCg -3'
miRNA:   3'- -CCGuCGUUGacuACCGU-CUCUGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 19062 0.68 0.88258
Target:  5'- uGCGGCAgGCUGGcguccucgGaGguGAGGCAGUCg -3'
miRNA:   3'- cCGUCGU-UGACUa-------C-CguCUCUGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 43476 0.68 0.88258
Target:  5'- cGGCGGCAGCaGGUgcGGCGGGcGCAg-- -3'
miRNA:   3'- -CCGUCGUUGaCUA--CCGUCUcUGUuag -5'
19218 5' -50.5 NC_004684.1 + 54230 0.68 0.8818
Target:  5'- cGGcCAGCAGCUGuuccagGGCAccgcgccGGGACAGc- -3'
miRNA:   3'- -CC-GUCGUUGACua----CCGU-------CUCUGUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.