miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19218 5' -50.5 NC_004684.1 + 42369 1.14 0.001585
Target:  5'- aGGCAGCAACUGAUGGCAGAGACAAUCg -3'
miRNA:   3'- -CCGUCGUUGACUACCGUCUCUGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 9214 0.79 0.291955
Target:  5'- aGCAGguGCUGGUGGCGGc-ACAGUCg -3'
miRNA:   3'- cCGUCguUGACUACCGUCucUGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 57743 0.78 0.340098
Target:  5'- aGGCGGCAGCUGcgcaGUGaGCGGucAGGCGGUCu -3'
miRNA:   3'- -CCGUCGUUGAC----UAC-CGUC--UCUGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 43503 0.76 0.432415
Target:  5'- cGGCAGCAGgUGcagcGGCAGGGGCGGg- -3'
miRNA:   3'- -CCGUCGUUgACua--CCGUCUCUGUUag -5'
19218 5' -50.5 NC_004684.1 + 62825 0.74 0.571195
Target:  5'- uGCAGCAGCgccucGAUGGCcucGGCAAUCa -3'
miRNA:   3'- cCGUCGUUGa----CUACCGucuCUGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 355 0.73 0.627829
Target:  5'- cGCAGCAGCUcGGUGGCc-AGGCcAUCg -3'
miRNA:   3'- cCGUCGUUGA-CUACCGucUCUGuUAG- -5'
19218 5' -50.5 NC_004684.1 + 6475 0.73 0.627829
Target:  5'- aGGCGuGCGACgccGUGGCcGAGAUGGUCg -3'
miRNA:   3'- -CCGU-CGUUGac-UACCGuCUCUGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 64919 0.72 0.666473
Target:  5'- uGGCGGCGACccaGGUGGCGGcggugagcgccuggcGGGCGGUg -3'
miRNA:   3'- -CCGUCGUUGa--CUACCGUC---------------UCUGUUAg -5'
19218 5' -50.5 NC_004684.1 + 22349 0.71 0.706943
Target:  5'- aGGCGGUGGC-GgcGGCGGcGGCGGUCg -3'
miRNA:   3'- -CCGUCGUUGaCuaCCGUCuCUGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 13461 0.71 0.729024
Target:  5'- aGCAGCAGCUGGaGGCcGAGgACGGc- -3'
miRNA:   3'- cCGUCGUUGACUaCCGuCUC-UGUUag -5'
19218 5' -50.5 NC_004684.1 + 1052 0.71 0.729024
Target:  5'- uGGCGGCAccgguuguGCUGGcUGGCGGcgcuGGACGugAUCg -3'
miRNA:   3'- -CCGUCGU--------UGACU-ACCGUC----UCUGU--UAG- -5'
19218 5' -50.5 NC_004684.1 + 31908 0.71 0.729024
Target:  5'- cGCAGCGACgu-UGcGCAGuucGGACAGUCc -3'
miRNA:   3'- cCGUCGUUGacuAC-CGUC---UCUGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 3779 0.71 0.739917
Target:  5'- aGGCga-AGCUGAUGGCGuccGAGGCGGUa -3'
miRNA:   3'- -CCGucgUUGACUACCGU---CUCUGUUAg -5'
19218 5' -50.5 NC_004684.1 + 5878 0.7 0.782195
Target:  5'- gGGCAGCAccagccugACcgGGUGGCGGcGGCGcugAUCg -3'
miRNA:   3'- -CCGUCGU--------UGa-CUACCGUCuCUGU---UAG- -5'
19218 5' -50.5 NC_004684.1 + 60857 0.69 0.802386
Target:  5'- cGGCGGCGAUguc-GGCcgGGAGGCGAUg -3'
miRNA:   3'- -CCGUCGUUGacuaCCG--UCUCUGUUAg -5'
19218 5' -50.5 NC_004684.1 + 6309 0.69 0.821814
Target:  5'- cGGUGGCGGCguu--GCGGAGACAAUg -3'
miRNA:   3'- -CCGUCGUUGacuacCGUCUCUGUUAg -5'
19218 5' -50.5 NC_004684.1 + 18567 0.69 0.822764
Target:  5'- cGGCGGCcgaggucaagaccgcGCUGGUGGCucuGGACGAUg -3'
miRNA:   3'- -CCGUCGu--------------UGACUACCGuc-UCUGUUAg -5'
19218 5' -50.5 NC_004684.1 + 5528 0.69 0.831214
Target:  5'- uGGC-GCAGCUGGUGGauGAGGCGc-- -3'
miRNA:   3'- -CCGuCGUUGACUACCguCUCUGUuag -5'
19218 5' -50.5 NC_004684.1 + 47906 0.69 0.84039
Target:  5'- aGCAGCGGCUGGcucCAGGGGCGcauGUCg -3'
miRNA:   3'- cCGUCGUUGACUaccGUCUCUGU---UAG- -5'
19218 5' -50.5 NC_004684.1 + 6424 0.68 0.848449
Target:  5'- cGGCGGCGGCgUGAacgccuucgcgcuUGGCcGAGGCGc-- -3'
miRNA:   3'- -CCGUCGUUG-ACU-------------ACCGuCUCUGUuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.