miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19218 5' -50.5 NC_004684.1 + 355 0.73 0.627829
Target:  5'- cGCAGCAGCUcGGUGGCc-AGGCcAUCg -3'
miRNA:   3'- cCGUCGUUGA-CUACCGucUCUGuUAG- -5'
19218 5' -50.5 NC_004684.1 + 1052 0.71 0.729024
Target:  5'- uGGCGGCAccgguuguGCUGGcUGGCGGcgcuGGACGugAUCg -3'
miRNA:   3'- -CCGUCGU--------UGACU-ACCGUC----UCUGU--UAG- -5'
19218 5' -50.5 NC_004684.1 + 1112 0.67 0.897584
Target:  5'- cGGC-GCAAC---UGGCAcGAGAUGGUCg -3'
miRNA:   3'- -CCGuCGUUGacuACCGU-CUCUGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 3779 0.71 0.739917
Target:  5'- aGGCga-AGCUGAUGGCGuccGAGGCGGUa -3'
miRNA:   3'- -CCGucgUUGACUACCGU---CUCUGUUAg -5'
19218 5' -50.5 NC_004684.1 + 5528 0.69 0.831214
Target:  5'- uGGC-GCAGCUGGUGGauGAGGCGc-- -3'
miRNA:   3'- -CCGuCGUUGACUACCguCUCUGUuag -5'
19218 5' -50.5 NC_004684.1 + 5878 0.7 0.782195
Target:  5'- gGGCAGCAccagccugACcgGGUGGCGGcGGCGcugAUCg -3'
miRNA:   3'- -CCGUCGU--------UGa-CUACCGUCuCUGU---UAG- -5'
19218 5' -50.5 NC_004684.1 + 6309 0.69 0.821814
Target:  5'- cGGUGGCGGCguu--GCGGAGACAAUg -3'
miRNA:   3'- -CCGUCGUUGacuacCGUCUCUGUUAg -5'
19218 5' -50.5 NC_004684.1 + 6424 0.68 0.848449
Target:  5'- cGGCGGCGGCgUGAacgccuucgcgcuUGGCcGAGGCGc-- -3'
miRNA:   3'- -CCGUCGUUG-ACU-------------ACCGuCUCUGUuag -5'
19218 5' -50.5 NC_004684.1 + 6475 0.73 0.627829
Target:  5'- aGGCGuGCGACgccGUGGCcGAGAUGGUCg -3'
miRNA:   3'- -CCGU-CGUUGac-UACCGuCUCUGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 8004 0.67 0.90466
Target:  5'- uGCAGCGACUGugccgccgGGCGGuuccaGGACAc-- -3'
miRNA:   3'- cCGUCGUUGACua------CCGUC-----UCUGUuag -5'
19218 5' -50.5 NC_004684.1 + 9214 0.79 0.291955
Target:  5'- aGCAGguGCUGGUGGCGGc-ACAGUCg -3'
miRNA:   3'- cCGUCguUGACUACCGUCucUGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 12703 0.68 0.866477
Target:  5'- uGGCcuucccGGUGGCUGGUGGCuccccgguagGGAGACAc-- -3'
miRNA:   3'- -CCG------UCGUUGACUACCG----------UCUCUGUuag -5'
19218 5' -50.5 NC_004684.1 + 13461 0.71 0.729024
Target:  5'- aGCAGCAGCUGGaGGCcGAGgACGGc- -3'
miRNA:   3'- cCGUCGUUGACUaCCGuCUC-UGUUag -5'
19218 5' -50.5 NC_004684.1 + 18567 0.69 0.822764
Target:  5'- cGGCGGCcgaggucaagaccgcGCUGGUGGCucuGGACGAUg -3'
miRNA:   3'- -CCGUCGu--------------UGACUACCGuc-UCUGUUAg -5'
19218 5' -50.5 NC_004684.1 + 19062 0.68 0.88258
Target:  5'- uGCGGCAgGCUGGcguccucgGaGguGAGGCAGUCg -3'
miRNA:   3'- cCGUCGU-UGACUa-------C-CguCUCUGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 19601 0.68 0.874662
Target:  5'- cGGCGGCcgAGgUGcUGGCGGuGACGcUCg -3'
miRNA:   3'- -CCGUCG--UUgACuACCGUCuCUGUuAG- -5'
19218 5' -50.5 NC_004684.1 + 21010 0.66 0.940968
Target:  5'- cGGcCAGCGACaucggcaucgUGAUGGCcGAGcACGAc- -3'
miRNA:   3'- -CC-GUCGUUG----------ACUACCGuCUC-UGUUag -5'
19218 5' -50.5 NC_004684.1 + 22349 0.71 0.706943
Target:  5'- aGGCGGUGGC-GgcGGCGGcGGCGGUCg -3'
miRNA:   3'- -CCGUCGUUGaCuaCCGUCuCUGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 27174 0.68 0.848449
Target:  5'- cGGCGGCGAcCUGGccacggcgaucuuUGGCGGcGGuGCGAUCc -3'
miRNA:   3'- -CCGUCGUU-GACU-------------ACCGUC-UC-UGUUAG- -5'
19218 5' -50.5 NC_004684.1 + 28079 0.66 0.940968
Target:  5'- cGCGGCAACUGG-GGCGcucguuAGGCGAg- -3'
miRNA:   3'- cCGUCGUUGACUaCCGUc-----UCUGUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.