miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19219 5' -67.8 NC_004684.1 + 48489 0.66 0.250025
Target:  5'- -uGCGCCgcgaCCCCGCCGacguggaggagccgCGCUGGUGc -3'
miRNA:   3'- gcCGUGGag--GGGGCGGCg-------------GCGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 47703 0.66 0.247697
Target:  5'- uGGCucgGCCaggCCuuGCCGCCgcGCCGGUa -3'
miRNA:   3'- gCCG---UGGag-GGggCGGCGG--CGGCCAc -5'
19219 5' -67.8 NC_004684.1 + 40275 0.66 0.247697
Target:  5'- aGGcCACCccguugaCCgCGCCGUCGuuGGUGu -3'
miRNA:   3'- gCC-GUGGag-----GGgGCGGCGGCggCCAC- -5'
19219 5' -67.8 NC_004684.1 + 8629 0.66 0.244239
Target:  5'- cCGGCACCgccgauccucggcaCCCCCGCCGUacaGCagcuccaGGa- -3'
miRNA:   3'- -GCCGUGGa-------------GGGGGCGGCGg--CGg------CCac -5'
19219 5' -67.8 NC_004684.1 + 11746 0.66 0.241956
Target:  5'- aGGC-CCUCCuCCaCGCaCGCCaGCCGa-- -3'
miRNA:   3'- gCCGuGGAGG-GG-GCG-GCGG-CGGCcac -5'
19219 5' -67.8 NC_004684.1 + 16781 0.66 0.241956
Target:  5'- uCGGCcacGCCgaugaCCCGCCGaCCGCCGa-- -3'
miRNA:   3'- -GCCG---UGGagg--GGGCGGC-GGCGGCcac -5'
19219 5' -67.8 NC_004684.1 + 17154 0.66 0.241956
Target:  5'- gGGCACCgUCgUCGCCGUCgaGCUGGUa -3'
miRNA:   3'- gCCGUGGaGGgGGCGGCGG--CGGCCAc -5'
19219 5' -67.8 NC_004684.1 + 64171 0.66 0.241956
Target:  5'- gGcGCACCUCUUCCaggcgcacgucGgCGuuGCCGGUGu -3'
miRNA:   3'- gC-CGUGGAGGGGG-----------CgGCggCGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 14492 0.66 0.241956
Target:  5'- cCGGUACCa----CGCCgGUCGCCGGUGg -3'
miRNA:   3'- -GCCGUGGaggggGCGG-CGGCGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 15418 0.66 0.241956
Target:  5'- uGGCcgacACCguggccaCCCUGCUGCUggaGCCGGUGc -3'
miRNA:   3'- gCCG----UGGag-----GGGGCGGCGG---CGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 4265 0.66 0.236325
Target:  5'- cCGGCggaaugGCCUCUaCCCGgagacaaUGCCGCCGGg- -3'
miRNA:   3'- -GCCG------UGGAGG-GGGCg------GCGGCGGCCac -5'
19219 5' -67.8 NC_004684.1 + 33511 0.66 0.236325
Target:  5'- cCGGCACCg--CCCGCa-CCGCCuGGUa -3'
miRNA:   3'- -GCCGUGGaggGGGCGgcGGCGG-CCAc -5'
19219 5' -67.8 NC_004684.1 + 24991 0.66 0.236325
Target:  5'- gCGGCAuCCUgcccaaCCCgGUCGCgcucagCGCCGGUGc -3'
miRNA:   3'- -GCCGU-GGAg-----GGGgCGGCG------GCGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 49070 0.66 0.236325
Target:  5'- aGGUGCUcgUCgCCCaCGUCGCCGCCaaccggcaGGUGc -3'
miRNA:   3'- gCCGUGG--AG-GGG-GCGGCGGCGG--------CCAC- -5'
19219 5' -67.8 NC_004684.1 + 8408 0.66 0.236325
Target:  5'- aCGGCAUgUUCcguguguggaaCCCGCgCGcCCGCCGGg- -3'
miRNA:   3'- -GCCGUGgAGG-----------GGGCG-GC-GGCGGCCac -5'
19219 5' -67.8 NC_004684.1 + 19180 0.66 0.233
Target:  5'- gCGGUGuugUCUCCCCCGUggugcgUGCCcgcgcgauagccugaGCCGGUGa -3'
miRNA:   3'- -GCCGU---GGAGGGGGCG------GCGG---------------CGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 27104 0.66 0.230805
Target:  5'- uCGGUACCgacuuugCgCUgGCCGuuGCCGGg- -3'
miRNA:   3'- -GCCGUGGa------GgGGgCGGCggCGGCCac -5'
19219 5' -67.8 NC_004684.1 + 27772 0.66 0.230805
Target:  5'- -cGCGCgaCCCCCGCCaggagugggagcGCUGCgUGGUGg -3'
miRNA:   3'- gcCGUGgaGGGGGCGG------------CGGCG-GCCAC- -5'
19219 5' -67.8 NC_004684.1 + 39872 0.66 0.230805
Target:  5'- uGGCGCgcaUCagCUCGCCcagGCCGUCGGUGu -3'
miRNA:   3'- gCCGUGg--AGg-GGGCGG---CGGCGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 30628 0.66 0.225395
Target:  5'- uCGGCACCgggcgcggCCCUgGCgGCgucagCGCCGGg- -3'
miRNA:   3'- -GCCGUGGa-------GGGGgCGgCG-----GCGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.