Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19219 | 5' | -67.8 | NC_004684.1 | + | 40275 | 0.66 | 0.247697 |
Target: 5'- aGGcCACCccguugaCCgCGCCGUCGuuGGUGu -3' miRNA: 3'- gCC-GUGGag-----GGgGCGGCGGCggCCAC- -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 27772 | 0.66 | 0.230805 |
Target: 5'- -cGCGCgaCCCCCGCCaggagugggagcGCUGCgUGGUGg -3' miRNA: 3'- gcCGUGgaGGGGGCGG------------CGGCG-GCCAC- -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 64171 | 0.66 | 0.241956 |
Target: 5'- gGcGCACCUCUUCCaggcgcacgucGgCGuuGCCGGUGu -3' miRNA: 3'- gC-CGUGGAGGGGG-----------CgGCggCGGCCAC- -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 13252 | 0.66 | 0.225394 |
Target: 5'- uGGCcagGCCgugaCCGCCagcgcgcuggugGCCGCCGGUGg -3' miRNA: 3'- gCCG---UGGagggGGCGG------------CGGCGGCCAC- -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 42538 | 0.66 | 0.220092 |
Target: 5'- gGGUGCCgaacggCCCgguggcgcuaCCGCUGCCGCCcuguguGGUGu -3' miRNA: 3'- gCCGUGGa-----GGG----------GGCGGCGGCGG------CCAC- -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 14492 | 0.66 | 0.241956 |
Target: 5'- cCGGUACCa----CGCCgGUCGCCGGUGg -3' miRNA: 3'- -GCCGUGGaggggGCGG-CGGCGGCCAC- -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 18270 | 0.66 | 0.220092 |
Target: 5'- aCGGCACg--CCCgGCCGCCuGCUGGc- -3' miRNA: 3'- -GCCGUGgagGGGgCGGCGG-CGGCCac -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 30800 | 0.66 | 0.220092 |
Target: 5'- cCGGCACCUacaCCgUGCCGUCGggcaccaaCCGGa- -3' miRNA: 3'- -GCCGUGGAg--GGgGCGGCGGC--------GGCCac -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 66949 | 0.66 | 0.220092 |
Target: 5'- cCGGCGCgauCUCgCCCCaGCCGUCGaCCucggGGUGc -3' miRNA: 3'- -GCCGUG---GAG-GGGG-CGGCGGC-GG----CCAC- -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 48489 | 0.66 | 0.250025 |
Target: 5'- -uGCGCCgcgaCCCCGCCGacguggaggagccgCGCUGGUGc -3' miRNA: 3'- gcCGUGGag--GGGGCGGCg-------------GCGGCCAC- -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 30628 | 0.66 | 0.225395 |
Target: 5'- uCGGCACCgggcgcggCCCUgGCgGCgucagCGCCGGg- -3' miRNA: 3'- -GCCGUGGa-------GGGGgCGgCG-----GCGGCCac -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 8629 | 0.66 | 0.244239 |
Target: 5'- cCGGCACCgccgauccucggcaCCCCCGCCGUacaGCagcuccaGGa- -3' miRNA: 3'- -GCCGUGGa-------------GGGGGCGGCGg--CGg------CCac -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 19180 | 0.66 | 0.233 |
Target: 5'- gCGGUGuugUCUCCCCCGUggugcgUGCCcgcgcgauagccugaGCCGGUGa -3' miRNA: 3'- -GCCGU---GGAGGGGGCG------GCGG---------------CGGCCAC- -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 39872 | 0.66 | 0.230805 |
Target: 5'- uGGCGCgcaUCagCUCGCCcagGCCGUCGGUGu -3' miRNA: 3'- gCCGUGg--AGg-GGGCGG---CGGCGGCCAC- -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 49070 | 0.66 | 0.236325 |
Target: 5'- aGGUGCUcgUCgCCCaCGUCGCCGCCaaccggcaGGUGc -3' miRNA: 3'- gCCGUGG--AG-GGG-GCGGCGGCGG--------CCAC- -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 17154 | 0.66 | 0.241956 |
Target: 5'- gGGCACCgUCgUCGCCGUCgaGCUGGUa -3' miRNA: 3'- gCCGUGGaGGgGGCGGCGG--CGGCCAc -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 8408 | 0.66 | 0.236325 |
Target: 5'- aCGGCAUgUUCcguguguggaaCCCGCgCGcCCGCCGGg- -3' miRNA: 3'- -GCCGUGgAGG-----------GGGCG-GC-GGCGGCCac -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 27104 | 0.66 | 0.230805 |
Target: 5'- uCGGUACCgacuuugCgCUgGCCGuuGCCGGg- -3' miRNA: 3'- -GCCGUGGa------GgGGgCGGCggCGGCCac -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 24991 | 0.66 | 0.236325 |
Target: 5'- gCGGCAuCCUgcccaaCCCgGUCGCgcucagCGCCGGUGc -3' miRNA: 3'- -GCCGU-GGAg-----GGGgCGGCG------GCGGCCAC- -5' |
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19219 | 5' | -67.8 | NC_004684.1 | + | 38792 | 0.66 | 0.224859 |
Target: 5'- aGGUACUugcugauUUCCCCgaccggcaggcaGCCGCCGCacacCGGUGg -3' miRNA: 3'- gCCGUGG-------AGGGGG------------CGGCGGCG----GCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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