miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19219 5' -67.8 NC_004684.1 + 12892 0.69 0.156463
Target:  5'- gGGaGCCUgCgCUCGCCGCCagcgguGCCGGUGc -3'
miRNA:   3'- gCCgUGGAgG-GGGCGGCGG------CGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 58386 0.7 0.128041
Target:  5'- aCGGCACCgcgcguggaggCCUUgGCCcgGCCGCCGGa- -3'
miRNA:   3'- -GCCGUGGa----------GGGGgCGG--CGGCGGCCac -5'
19219 5' -67.8 NC_004684.1 + 51499 0.7 0.131314
Target:  5'- uGGCACCgCCCggucaCCGCCGCCuGgCGGg- -3'
miRNA:   3'- gCCGUGGaGGG-----GGCGGCGG-CgGCCac -5'
19219 5' -67.8 NC_004684.1 + 34130 0.69 0.134326
Target:  5'- gCGGuCACgUUCCUCGCCGCCucgggcgGCaCGGUGc -3'
miRNA:   3'- -GCC-GUGgAGGGGGCGGCGG-------CG-GCCAC- -5'
19219 5' -67.8 NC_004684.1 + 41328 0.69 0.134664
Target:  5'- aCGGCACCgcgaCCGCCGaCgGCCGGg- -3'
miRNA:   3'- -GCCGUGGagggGGCGGC-GgCGGCCac -5'
19219 5' -67.8 NC_004684.1 + 16290 0.69 0.141601
Target:  5'- gCGGCGCUUCa-CUGUCguaucagaccggGCCGCCGGUGa -3'
miRNA:   3'- -GCCGUGGAGggGGCGG------------CGGCGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 66461 0.69 0.148863
Target:  5'- gCGGCGuugUCUCCa-CGCCGCCacCCGGUGg -3'
miRNA:   3'- -GCCGU---GGAGGggGCGGCGGc-GGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 64615 0.69 0.15262
Target:  5'- cCGGCugaACCUCCagCUCGuuGCCGUCGGc- -3'
miRNA:   3'- -GCCG---UGGAGG--GGGCggCGGCGGCCac -5'
19219 5' -67.8 NC_004684.1 + 58898 0.69 0.156075
Target:  5'- aCGGCACCgucucgccgUCCCCGCCccaccccGCCuCCGGg- -3'
miRNA:   3'- -GCCGUGGa--------GGGGGCGG-------CGGcGGCCac -5'
19219 5' -67.8 NC_004684.1 + 23562 0.7 0.127718
Target:  5'- gCGGCcuggacaGCCUgCCgggCCGCgcgaacacCGCCGCCGGUGg -3'
miRNA:   3'- -GCCG-------UGGAgGG---GGCG--------GCGGCGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 37597 0.7 0.124844
Target:  5'- uCGGUACCgugcgggCCCggCCGCCcaugccgaacGCCGUCGGUGc -3'
miRNA:   3'- -GCCGUGGa------GGG--GGCGG----------CGGCGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 25517 0.7 0.112782
Target:  5'- gCGGCugUUCUCgaCCGCCGaCGCCGGg- -3'
miRNA:   3'- -GCCGugGAGGG--GGCGGCgGCGGCCac -5'
19219 5' -67.8 NC_004684.1 + 19739 0.73 0.067083
Target:  5'- gCGGCACCUggagcgugcaguaCCUgCGCgGCCuGCCGGUGc -3'
miRNA:   3'- -GCCGUGGA-------------GGGgGCGgCGG-CGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 2690 0.73 0.070866
Target:  5'- gGGCACCgcaUCCCCgGCC-UgGCCGGUGc -3'
miRNA:   3'- gCCGUGG---AGGGGgCGGcGgCGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 677 0.73 0.078645
Target:  5'- gCGuGCGCCugaUCCUCgGCCccgaggucaGCCGCCGGUGg -3'
miRNA:   3'- -GC-CGUGG---AGGGGgCGG---------CGGCGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 12949 0.72 0.087238
Target:  5'- uCGGCACCcccggugCUCCCGCCGaCCGgCGGc- -3'
miRNA:   3'- -GCCGUGGa------GGGGGCGGC-GGCgGCCac -5'
19219 5' -67.8 NC_004684.1 + 18335 0.71 0.096719
Target:  5'- cCGGUGCCgCCCCCGgaGCCGaCCGGc- -3'
miRNA:   3'- -GCCGUGGaGGGGGCggCGGC-GGCCac -5'
19219 5' -67.8 NC_004684.1 + 63546 0.71 0.107168
Target:  5'- uGGCgcucgGCCUCCUCgGCCGCUGCCaucaGGUc -3'
miRNA:   3'- gCCG-----UGGAGGGGgCGGCGGCGG----CCAc -5'
19219 5' -67.8 NC_004684.1 + 9828 0.7 0.112782
Target:  5'- aGGcCACCgucuugCCgUCGaucaCCGCCGCCGGUGa -3'
miRNA:   3'- gCC-GUGGa-----GGgGGC----GGCGGCGGCCAC- -5'
19219 5' -67.8 NC_004684.1 + 12865 0.7 0.112782
Target:  5'- aGGcCGCCaCCgCCgagGCCGCCGCCGGg- -3'
miRNA:   3'- gCC-GUGGaGGgGG---CGGCGGCGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.