miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19220 3' -58.9 NC_004684.1 + 4190 0.66 0.59708
Target:  5'- cGGCGggCGCGGUGGUucugaucaccGCCAGCCAc- -3'
miRNA:   3'- cCCGUa-GUGCCGCCAc---------CGGUUGGUca -5'
19220 3' -58.9 NC_004684.1 + 35534 0.66 0.59708
Target:  5'- cGGGCAgcucgCACGGCGucucauacaGGCCcgccCCGGUg -3'
miRNA:   3'- -CCCGUa----GUGCCGCca-------CCGGuu--GGUCA- -5'
19220 3' -58.9 NC_004684.1 + 67205 0.66 0.59708
Target:  5'- aGGGCcacCuuGGUGGUGGucCCGACCAa- -3'
miRNA:   3'- -CCCGua-GugCCGCCACC--GGUUGGUca -5'
19220 3' -58.9 NC_004684.1 + 53449 0.66 0.59708
Target:  5'- aGGGCcccccgcgaguGUCAgcacCGGCaacgGGUGGUUGGCCAGg -3'
miRNA:   3'- -CCCG-----------UAGU----GCCG----CCACCGGUUGGUCa -5'
19220 3' -58.9 NC_004684.1 + 33500 0.66 0.59708
Target:  5'- cGGCGgcccuguacUCGCgGGCGGUggcGGCUAugCGGg -3'
miRNA:   3'- cCCGU---------AGUG-CCGCCA---CCGGUugGUCa -5'
19220 3' -58.9 NC_004684.1 + 30166 0.66 0.59708
Target:  5'- uGGGCgAUCaacgccgucgGCGGCgagcuGGUGGCCA-CCAa- -3'
miRNA:   3'- -CCCG-UAG----------UGCCG-----CCACCGGUuGGUca -5'
19220 3' -58.9 NC_004684.1 + 2622 0.66 0.59708
Target:  5'- uGGaagCA-GGCGGUGGCCAACgCAu- -3'
miRNA:   3'- cCCguaGUgCCGCCACCGGUUG-GUca -5'
19220 3' -58.9 NC_004684.1 + 46120 0.66 0.59708
Target:  5'- cGGGCG-CGCGuGCcggGGUGGUUGACCuGg -3'
miRNA:   3'- -CCCGUaGUGC-CG---CCACCGGUUGGuCa -5'
19220 3' -58.9 NC_004684.1 + 61081 0.66 0.59708
Target:  5'- cGGCcaagUACGGCcuGGUGGaCCugGACCAGg -3'
miRNA:   3'- cCCGua--GUGCCG--CCACC-GG--UUGGUCa -5'
19220 3' -58.9 NC_004684.1 + 25558 0.66 0.586521
Target:  5'- -cGCGUaCGCGuCGGUGGCCAGcgccuCCGGg -3'
miRNA:   3'- ccCGUA-GUGCcGCCACCGGUU-----GGUCa -5'
19220 3' -58.9 NC_004684.1 + 33709 0.66 0.586521
Target:  5'- aGGGUGUCcagcGCGGUGGUGGU--GCaCAGc -3'
miRNA:   3'- -CCCGUAG----UGCCGCCACCGguUG-GUCa -5'
19220 3' -58.9 NC_004684.1 + 62970 0.66 0.586521
Target:  5'- uGGCGUgCuCGGUGGUGcGCacguGGCCGGUg -3'
miRNA:   3'- cCCGUA-GuGCCGCCAC-CGg---UUGGUCA- -5'
19220 3' -58.9 NC_004684.1 + 46681 0.66 0.586521
Target:  5'- uGGCGUU---GCGGUGGCgGugCGGUg -3'
miRNA:   3'- cCCGUAGugcCGCCACCGgUugGUCA- -5'
19220 3' -58.9 NC_004684.1 + 47903 0.66 0.586521
Target:  5'- aGGCAggcCACGGuCGGcGGCCucgGCCAc- -3'
miRNA:   3'- cCCGUa--GUGCC-GCCaCCGGu--UGGUca -5'
19220 3' -58.9 NC_004684.1 + 57602 0.66 0.575999
Target:  5'- cGGUGgugaccgugCACGaGCGGUacGGCCAGCCAc- -3'
miRNA:   3'- cCCGUa--------GUGC-CGCCA--CCGGUUGGUca -5'
19220 3' -58.9 NC_004684.1 + 1026 0.66 0.575999
Target:  5'- -cGCAgcUCGCGGCGuGgGGCCAgaaauggcggcACCGGUu -3'
miRNA:   3'- ccCGU--AGUGCCGC-CaCCGGU-----------UGGUCA- -5'
19220 3' -58.9 NC_004684.1 + 26380 0.66 0.575999
Target:  5'- cGGCAaCGuCGGCGGcgaucUGGCCAacgccgccACCGGc -3'
miRNA:   3'- cCCGUaGU-GCCGCC-----ACCGGU--------UGGUCa -5'
19220 3' -58.9 NC_004684.1 + 5762 0.66 0.56552
Target:  5'- aGGGUGaCGCGGUGG-GGCgCAgcgcgcuacugcGCCAGg -3'
miRNA:   3'- -CCCGUaGUGCCGCCaCCG-GU------------UGGUCa -5'
19220 3' -58.9 NC_004684.1 + 48977 0.66 0.56552
Target:  5'- gGGGCGggCGCGuCGGUGcccuGCUGGCCGGg -3'
miRNA:   3'- -CCCGUa-GUGCcGCCAC----CGGUUGGUCa -5'
19220 3' -58.9 NC_004684.1 + 66538 0.66 0.56552
Target:  5'- cGGCGggCACGGCGGUaggcguuguGcGCCucACCGGa -3'
miRNA:   3'- cCCGUa-GUGCCGCCA---------C-CGGu-UGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.