miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19220 5' -56.9 NC_004684.1 + 5946 0.66 0.721353
Target:  5'- gCACCGGCGgcgaGACaaugccgCCGGUGUc--- -3'
miRNA:   3'- aGUGGCCGCa---CUGga-----GGCCACAcuuc -5'
19220 5' -56.9 NC_004684.1 + 39350 0.66 0.721353
Target:  5'- cCACCGGCaUGAUCUcgcgcucugCCGGUGUc--- -3'
miRNA:   3'- aGUGGCCGcACUGGA---------GGCCACAcuuc -5'
19220 5' -56.9 NC_004684.1 + 36591 0.66 0.710984
Target:  5'- -gACCGGCaugacccugGUGGCCcCCGGUGaGAc- -3'
miRNA:   3'- agUGGCCG---------CACUGGaGGCCACaCUuc -5'
19220 5' -56.9 NC_004684.1 + 65755 0.66 0.700542
Target:  5'- cUCGCgGGCGuUGGCCgccgcgcgCCGGUGg---- -3'
miRNA:   3'- -AGUGgCCGC-ACUGGa-------GGCCACacuuc -5'
19220 5' -56.9 NC_004684.1 + 18107 0.66 0.679482
Target:  5'- cCACCGaGCGcGAgg-CCGGUGUGGAc -3'
miRNA:   3'- aGUGGC-CGCaCUggaGGCCACACUUc -5'
19220 5' -56.9 NC_004684.1 + 17783 0.67 0.658251
Target:  5'- aCACCGGCcaGccgcaacgacGCCUgCgGGUGUGAGGu -3'
miRNA:   3'- aGUGGCCGcaC----------UGGA-GgCCACACUUC- -5'
19220 5' -56.9 NC_004684.1 + 61440 0.67 0.63693
Target:  5'- cUCACCGGCGcggccagguugGACCgcCCGGUGg---- -3'
miRNA:   3'- -AGUGGCCGCa----------CUGGa-GGCCACacuuc -5'
19220 5' -56.9 NC_004684.1 + 19530 0.67 0.63693
Target:  5'- cUCACCGGCaccGCCUCCGGUu----- -3'
miRNA:   3'- -AGUGGCCGcacUGGAGGCCAcacuuc -5'
19220 5' -56.9 NC_004684.1 + 55811 0.67 0.63693
Target:  5'- gCACCGGCG-GGCU---GGUGUGGAa -3'
miRNA:   3'- aGUGGCCGCaCUGGaggCCACACUUc -5'
19220 5' -56.9 NC_004684.1 + 28574 0.67 0.626258
Target:  5'- cCACCGGUGUGcggcggcuGCCUgCCGGUc-GggGa -3'
miRNA:   3'- aGUGGCCGCAC--------UGGA-GGCCAcaCuuC- -5'
19220 5' -56.9 NC_004684.1 + 55790 0.67 0.626258
Target:  5'- -uGgCGGCGUGACCggguggUCCGGUGa---- -3'
miRNA:   3'- agUgGCCGCACUGG------AGGCCACacuuc -5'
19220 5' -56.9 NC_004684.1 + 41898 0.68 0.604938
Target:  5'- cUCGCCGGuCGccUGGCC-CUGGUGaUGAGc -3'
miRNA:   3'- -AGUGGCC-GC--ACUGGaGGCCAC-ACUUc -5'
19220 5' -56.9 NC_004684.1 + 57601 0.68 0.594307
Target:  5'- cCACCGGCGcagGGCCU-CGGcGUaGAGGu -3'
miRNA:   3'- aGUGGCCGCa--CUGGAgGCCaCA-CUUC- -5'
19220 5' -56.9 NC_004684.1 + 59295 0.68 0.594307
Target:  5'- -uGCCGGUG-GGCaggCCGGUGUcGggGu -3'
miRNA:   3'- agUGGCCGCaCUGga-GGCCACA-CuuC- -5'
19220 5' -56.9 NC_004684.1 + 37537 0.68 0.573143
Target:  5'- aCugCGGCGgcgaUGACCcgCCGGUG-GAc- -3'
miRNA:   3'- aGugGCCGC----ACUGGa-GGCCACaCUuc -5'
19220 5' -56.9 NC_004684.1 + 21631 0.68 0.573143
Target:  5'- gCACCGGCGUGACCaagaaccuggUCaCGGUcaugGUGcuGa -3'
miRNA:   3'- aGUGGCCGCACUGG----------AG-GCCA----CACuuC- -5'
19220 5' -56.9 NC_004684.1 + 39155 0.68 0.573143
Target:  5'- cCACCGcGC-UGugCUCCGG-GUGGGc -3'
miRNA:   3'- aGUGGC-CGcACugGAGGCCaCACUUc -5'
19220 5' -56.9 NC_004684.1 + 4030 0.68 0.562626
Target:  5'- uUCACCGGCauggcgacgGUGGCCUaccggccaucgCCGG-GUGAc- -3'
miRNA:   3'- -AGUGGCCG---------CACUGGA-----------GGCCaCACUuc -5'
19220 5' -56.9 NC_004684.1 + 36690 0.69 0.541755
Target:  5'- aUCGuuGGCGUGcCCaCCGGcGUGAGc -3'
miRNA:   3'- -AGUggCCGCACuGGaGGCCaCACUUc -5'
19220 5' -56.9 NC_004684.1 + 64655 0.69 0.541755
Target:  5'- aCGCCGaacGUGUGGCCgUgCGGUGUGGc- -3'
miRNA:   3'- aGUGGC---CGCACUGG-AgGCCACACUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.