miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19221 3' -56.4 NC_004684.1 + 6701 0.66 0.707637
Target:  5'- aCCAuGGCCgUGAUCaCCGACgccuccaaGCUGg -3'
miRNA:   3'- aGGUcCCGGaACUAG-GGUUGag------CGAC- -5'
19221 3' -56.4 NC_004684.1 + 26810 0.66 0.707637
Target:  5'- gCCAcGGGCCgguUGAUgaacgacaCCAGCgCGCUGg -3'
miRNA:   3'- aGGU-CCCGGa--ACUAg-------GGUUGaGCGAC- -5'
19221 3' -56.4 NC_004684.1 + 56212 0.66 0.696987
Target:  5'- cCCGGucGGUCaUGA-CCC-ACUCGCUGg -3'
miRNA:   3'- aGGUC--CCGGaACUaGGGuUGAGCGAC- -5'
19221 3' -56.4 NC_004684.1 + 54216 0.66 0.686276
Target:  5'- cUCGGGGCCgaGGUCggCCAGCa-GCUGu -3'
miRNA:   3'- aGGUCCCGGaaCUAG--GGUUGagCGAC- -5'
19221 3' -56.4 NC_004684.1 + 67202 0.66 0.675515
Target:  5'- gCCAGGGCCaccuugguggUGGUCCCGAC-Ca--- -3'
miRNA:   3'- aGGUCCCGGa---------ACUAGGGUUGaGcgac -5'
19221 3' -56.4 NC_004684.1 + 18044 0.67 0.643031
Target:  5'- gCCuGGGCC-UGAUCCCGucagCGCc- -3'
miRNA:   3'- aGGuCCCGGaACUAGGGUuga-GCGac -5'
19221 3' -56.4 NC_004684.1 + 15519 0.67 0.632171
Target:  5'- cCCGGGGCCggGcgCUgGAggCGCUGa -3'
miRNA:   3'- aGGUCCCGGaaCuaGGgUUgaGCGAC- -5'
19221 3' -56.4 NC_004684.1 + 30842 0.67 0.632171
Target:  5'- -gUAGGuGCCggaaUGcgCCCGguACUCGCUGa -3'
miRNA:   3'- agGUCC-CGGa---ACuaGGGU--UGAGCGAC- -5'
19221 3' -56.4 NC_004684.1 + 6633 0.67 0.599627
Target:  5'- gCCAGGGCCgUGcUCCCuGACgugcagCGCg- -3'
miRNA:   3'- aGGUCCCGGaACuAGGG-UUGa-----GCGac -5'
19221 3' -56.4 NC_004684.1 + 17594 0.67 0.599627
Target:  5'- gCCGGGGaggaCUacgagcUGAUCCCGGCacUGCUGg -3'
miRNA:   3'- aGGUCCCg---GA------ACUAGGGUUGa-GCGAC- -5'
19221 3' -56.4 NC_004684.1 + 36765 0.68 0.57805
Target:  5'- gCCAGGGCCgcg--CCCggUgccgaCGCUGg -3'
miRNA:   3'- aGGUCCCGGaacuaGGGuuGa----GCGAC- -5'
19221 3' -56.4 NC_004684.1 + 26092 0.68 0.57805
Target:  5'- cUCCAGcGGUCgccUGAUCuCCAACaccucggCGCUGu -3'
miRNA:   3'- -AGGUC-CCGGa--ACUAG-GGUUGa------GCGAC- -5'
19221 3' -56.4 NC_004684.1 + 42467 0.68 0.57805
Target:  5'- cUCGGGGUCgccg-CCCAGCgCGCUGa -3'
miRNA:   3'- aGGUCCCGGaacuaGGGUUGaGCGAC- -5'
19221 3' -56.4 NC_004684.1 + 64716 0.68 0.556648
Target:  5'- gCCAGGGCCUccaucgGGUCCaucuuguggcCGACcUGCUGg -3'
miRNA:   3'- aGGUCCCGGAa-----CUAGG----------GUUGaGCGAC- -5'
19221 3' -56.4 NC_004684.1 + 64427 0.69 0.48393
Target:  5'- gUCCAGGGCaccgaUGGUCUCGAUgugCGCg- -3'
miRNA:   3'- -AGGUCCCGga---ACUAGGGUUGa--GCGac -5'
19221 3' -56.4 NC_004684.1 + 62864 0.69 0.481916
Target:  5'- cUCCGGGGUCUgccccggaacagGAUCCCGGCcaugcCGUUGc -3'
miRNA:   3'- -AGGUCCCGGAa-----------CUAGGGUUGa----GCGAC- -5'
19221 3' -56.4 NC_004684.1 + 45111 0.7 0.422606
Target:  5'- gCCGcgcGGGCCUUGGccgccgccaggcggUCCCAuGCUCGCg- -3'
miRNA:   3'- aGGU---CCCGGAACU--------------AGGGU-UGAGCGac -5'
19221 3' -56.4 NC_004684.1 + 57817 0.73 0.284975
Target:  5'- aCCAcGGCC-UGGUCCCGGCggUGCUGg -3'
miRNA:   3'- aGGUcCCGGaACUAGGGUUGa-GCGAC- -5'
19221 3' -56.4 NC_004684.1 + 42801 1.09 0.000861
Target:  5'- cUCCAGGGCCUUGAUCCCAACUCGCUGg -3'
miRNA:   3'- -AGGUCCCGGAACUAGGGUUGAGCGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.