miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19221 5' -55.4 NC_004684.1 + 58584 0.66 0.792559
Target:  5'- cGCCGCAgCGcCUCGUacAUGCGcGGUGCu -3'
miRNA:   3'- cCGGCGU-GUuGAGCG--UAUGC-UCGCGc -5'
19221 5' -55.4 NC_004684.1 + 61312 0.66 0.792559
Target:  5'- aGGCCGCcccCGGCaUCGgcUACcAGCGCGg -3'
miRNA:   3'- -CCGGCGu--GUUG-AGCguAUGcUCGCGC- -5'
19221 5' -55.4 NC_004684.1 + 689 0.66 0.792559
Target:  5'- cGCCGCGCAGCgcaagacCGCcgcCGGGUGgGa -3'
miRNA:   3'- cCGGCGUGUUGa------GCGuauGCUCGCgC- -5'
19221 5' -55.4 NC_004684.1 + 17370 0.66 0.792559
Target:  5'- cGGCCaCGCuGC-CGCcgACGGuGCGCa -3'
miRNA:   3'- -CCGGcGUGuUGaGCGuaUGCU-CGCGc -5'
19221 5' -55.4 NC_004684.1 + 44754 0.66 0.792559
Target:  5'- aGGCCGUGCA--UCGUGUACcGGCGa- -3'
miRNA:   3'- -CCGGCGUGUugAGCGUAUGcUCGCgc -5'
19221 5' -55.4 NC_004684.1 + 61171 0.66 0.792559
Target:  5'- uGGCCGCcCAGCUgGC---CGAGauCGCGc -3'
miRNA:   3'- -CCGGCGuGUUGAgCGuauGCUC--GCGC- -5'
19221 5' -55.4 NC_004684.1 + 11374 0.66 0.789678
Target:  5'- uGGCCagcagcguggugguGCGCGACUUGC---CGcGCGCGa -3'
miRNA:   3'- -CCGG--------------CGUGUUGAGCGuauGCuCGCGC- -5'
19221 5' -55.4 NC_004684.1 + 54089 0.66 0.782901
Target:  5'- aGUCGUACAGCU-GCuccgACG-GCGCGc -3'
miRNA:   3'- cCGGCGUGUUGAgCGua--UGCuCGCGC- -5'
19221 5' -55.4 NC_004684.1 + 51521 0.66 0.782901
Target:  5'- gGGCCGCugGcggccacguGCUCgaugaccucgGCGUGCGucGGUGUGg -3'
miRNA:   3'- -CCGGCGugU---------UGAG----------CGUAUGC--UCGCGC- -5'
19221 5' -55.4 NC_004684.1 + 17668 0.66 0.782901
Target:  5'- uGCCGCugAguuugaacGC-CGCGccgcCGAGCGCGu -3'
miRNA:   3'- cCGGCGugU--------UGaGCGUau--GCUCGCGC- -5'
19221 5' -55.4 NC_004684.1 + 39502 0.66 0.782901
Target:  5'- aGGCCGgGcCAACugucgUCGUAgcCGAGCaGCGa -3'
miRNA:   3'- -CCGGCgU-GUUG-----AGCGUauGCUCG-CGC- -5'
19221 5' -55.4 NC_004684.1 + 57084 0.66 0.782901
Target:  5'- cGGCgCGCACAucggUGCGgGCGAccucugGCGCGa -3'
miRNA:   3'- -CCG-GCGUGUuga-GCGUaUGCU------CGCGC- -5'
19221 5' -55.4 NC_004684.1 + 17498 0.66 0.782901
Target:  5'- aGCUGauuaCGCAGCU-GC--GCGAGCGCGg -3'
miRNA:   3'- cCGGC----GUGUUGAgCGuaUGCUCGCGC- -5'
19221 5' -55.4 NC_004684.1 + 26327 0.66 0.782901
Target:  5'- gGGCCGC-CGAUU-GCcgACGcGGUGCGc -3'
miRNA:   3'- -CCGGCGuGUUGAgCGuaUGC-UCGCGC- -5'
19221 5' -55.4 NC_004684.1 + 43965 0.66 0.782901
Target:  5'- aGGCCgaGCAuCAGC-CGUGcGCGGGCGUa -3'
miRNA:   3'- -CCGG--CGU-GUUGaGCGUaUGCUCGCGc -5'
19221 5' -55.4 NC_004684.1 + 56163 0.66 0.777033
Target:  5'- uGGCCG-ACGACggcgacgacggcggCGCuauCGAGCGCc -3'
miRNA:   3'- -CCGGCgUGUUGa-------------GCGuauGCUCGCGc -5'
19221 5' -55.4 NC_004684.1 + 65869 0.66 0.773092
Target:  5'- gGGUCGCGuCG--UCGCcguUGAGCGCGg -3'
miRNA:   3'- -CCGGCGU-GUugAGCGuauGCUCGCGC- -5'
19221 5' -55.4 NC_004684.1 + 52910 0.66 0.773092
Target:  5'- cGGCCaGCACGGCggcguggcCGCAUuccagGCaGGCGCu -3'
miRNA:   3'- -CCGG-CGUGUUGa-------GCGUA-----UGcUCGCGc -5'
19221 5' -55.4 NC_004684.1 + 66587 0.66 0.773092
Target:  5'- gGGCCGcCACGGCgaggUGCAggUGAGgGCc -3'
miRNA:   3'- -CCGGC-GUGUUGa---GCGUauGCUCgCGc -5'
19221 5' -55.4 NC_004684.1 + 61471 0.66 0.773092
Target:  5'- uGGCCaGCGCGGC-CaGCcgGuCGuGCGCGa -3'
miRNA:   3'- -CCGG-CGUGUUGaG-CGuaU-GCuCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.