miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19222 3' -59.9 NC_004684.1 + 48965 0.66 0.524171
Target:  5'- gGCGGgGUGGCCGGG-GCGGgcgcgucGGUg -3'
miRNA:   3'- gUGCCaCACCGGCUCgCGCCac-----UCAa -5'
19222 3' -59.9 NC_004684.1 + 42639 0.66 0.503926
Target:  5'- -cCGGUGcUGGUgccgccagcgaUGAGCGCGGUGgAGg- -3'
miRNA:   3'- guGCCAC-ACCG-----------GCUCGCGCCAC-UCaa -5'
19222 3' -59.9 NC_004684.1 + 42156 0.66 0.503926
Target:  5'- gCACGGccuaUG-GGUCGAgagcgccgcacuGCGCGGUGAGc- -3'
miRNA:   3'- -GUGCC----ACaCCGGCU------------CGCGCCACUCaa -5'
19222 3' -59.9 NC_004684.1 + 62658 0.67 0.454912
Target:  5'- uGCGGcUGUGGCCGuGCGCGa--GGUc -3'
miRNA:   3'- gUGCC-ACACCGGCuCGCGCcacUCAa -5'
19222 3' -59.9 NC_004684.1 + 27431 0.67 0.445418
Target:  5'- gCAUGGUGgcGGCauugGAGCGCGGUGc--- -3'
miRNA:   3'- -GUGCCACa-CCGg---CUCGCGCCACucaa -5'
19222 3' -59.9 NC_004684.1 + 57214 0.67 0.436036
Target:  5'- gGCGGUcUGGaacuccUCGAGCGCGGUGGc-- -3'
miRNA:   3'- gUGCCAcACC------GGCUCGCGCCACUcaa -5'
19222 3' -59.9 NC_004684.1 + 32606 0.68 0.408592
Target:  5'- aACGGcGUGGCCGuacccGGUGCGGagUGGGa- -3'
miRNA:   3'- gUGCCaCACCGGC-----UCGCGCC--ACUCaa -5'
19222 3' -59.9 NC_004684.1 + 47033 0.68 0.390906
Target:  5'- -uCGGgGUGGCCu-GCGCGGUGAc-- -3'
miRNA:   3'- guGCCaCACCGGcuCGCGCCACUcaa -5'
19222 3' -59.9 NC_004684.1 + 51166 0.68 0.390906
Target:  5'- -uCGGUGUGGCCGAuGCGcCGGg----- -3'
miRNA:   3'- guGCCACACCGGCU-CGC-GCCacucaa -5'
19222 3' -59.9 NC_004684.1 + 14103 0.68 0.390906
Target:  5'- -gUGGUGUGGCUcAGCccCGGUGGGUg -3'
miRNA:   3'- guGCCACACCGGcUCGc-GCCACUCAa -5'
19222 3' -59.9 NC_004684.1 + 63140 0.68 0.382252
Target:  5'- -gUGGUgGUGGCCGAGUGCGGc----- -3'
miRNA:   3'- guGCCA-CACCGGCUCGCGCCacucaa -5'
19222 3' -59.9 NC_004684.1 + 54908 0.68 0.365332
Target:  5'- gGCGGcccugGUGGCCGAGCGuCGcaaaGAGUg -3'
miRNA:   3'- gUGCCa----CACCGGCUCGC-GCca--CUCAa -5'
19222 3' -59.9 NC_004684.1 + 57042 0.7 0.302949
Target:  5'- uCACGGUG-GGCCacggcaccAGCGCGGUGGc-- -3'
miRNA:   3'- -GUGCCACaCCGGc-------UCGCGCCACUcaa -5'
19222 3' -59.9 NC_004684.1 + 28073 0.7 0.295041
Target:  5'- gGCGGUGUGGCCGGGCcgccgcgcgacccGCaccgGGUG-GUg -3'
miRNA:   3'- gUGCCACACCGGCUCG-------------CG----CCACuCAa -5'
19222 3' -59.9 NC_004684.1 + 40711 0.71 0.26177
Target:  5'- gGCGGcgGUGGCCGggacgaccAGCGCGGcGGGg- -3'
miRNA:   3'- gUGCCa-CACCGGC--------UCGCGCCaCUCaa -5'
19222 3' -59.9 NC_004684.1 + 63912 0.73 0.183395
Target:  5'- cCACGGUGcGGCCcGGCGUGGcUGAGc- -3'
miRNA:   3'- -GUGCCACaCCGGcUCGCGCC-ACUCaa -5'
19222 3' -59.9 NC_004684.1 + 11365 0.74 0.169554
Target:  5'- cCACGGUgGUGGCCaGcAGCGUGGUG-GUg -3'
miRNA:   3'- -GUGCCA-CACCGG-C-UCGCGCCACuCAa -5'
19222 3' -59.9 NC_004684.1 + 43625 1.04 0.000943
Target:  5'- cCACGGUGUGGCCGAGCGCGGUGAGUUc -3'
miRNA:   3'- -GUGCCACACCGGCUCGCGCCACUCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.