miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19222 5' -52.9 NC_004684.1 + 37967 0.66 0.874399
Target:  5'- ---uCGUCCUGGAGgccaUCGuuGCCgACGCg -3'
miRNA:   3'- guuuGCAGGACCUUg---AGU--CGGgUGUG- -5'
19222 5' -52.9 NC_004684.1 + 31563 0.66 0.874399
Target:  5'- gCGAGCGUCgCUGauGACguugaGGUCCACACg -3'
miRNA:   3'- -GUUUGCAG-GACc-UUGag---UCGGGUGUG- -5'
19222 5' -52.9 NC_004684.1 + 31509 0.66 0.866393
Target:  5'- ---gUGUCg-GGGACcaCGGCCCGCGCg -3'
miRNA:   3'- guuuGCAGgaCCUUGa-GUCGGGUGUG- -5'
19222 5' -52.9 NC_004684.1 + 56210 0.66 0.86147
Target:  5'- gAGACG-CUgugGGAGCggcgcaugcaggcggUCAGCCUGCGCa -3'
miRNA:   3'- gUUUGCaGGa--CCUUG---------------AGUCGGGUGUG- -5'
19222 5' -52.9 NC_004684.1 + 57071 0.66 0.849642
Target:  5'- gCAGGCaccaCCUGGAACgagguggCcGCCCGCAUg -3'
miRNA:   3'- -GUUUGca--GGACCUUGa------GuCGGGUGUG- -5'
19222 5' -52.9 NC_004684.1 + 41503 0.66 0.849642
Target:  5'- cCGggUGUCCaUGGcccGCUacgaGGCCCugGCa -3'
miRNA:   3'- -GUuuGCAGG-ACCu--UGAg---UCGGGugUG- -5'
19222 5' -52.9 NC_004684.1 + 19734 0.66 0.849642
Target:  5'- uGAGCGcggcaCCUGGAGCgugCAGuaCCUGCGCg -3'
miRNA:   3'- gUUUGCa----GGACCUUGa--GUC--GGGUGUG- -5'
19222 5' -52.9 NC_004684.1 + 28961 0.66 0.849642
Target:  5'- -cAACcUCCgacuucgaggUGGAGCUgAGCCUGCGCg -3'
miRNA:   3'- guUUGcAGG----------ACCUUGAgUCGGGUGUG- -5'
19222 5' -52.9 NC_004684.1 + 2637 0.66 0.840913
Target:  5'- -cGACG-CCUGGcaccAGCUCGGCCaGCAg -3'
miRNA:   3'- guUUGCaGGACC----UUGAGUCGGgUGUg -5'
19222 5' -52.9 NC_004684.1 + 58825 0.67 0.83196
Target:  5'- uCGGAUGUCC-GGGAUgaugCGGUCgGCGCa -3'
miRNA:   3'- -GUUUGCAGGaCCUUGa---GUCGGgUGUG- -5'
19222 5' -52.9 NC_004684.1 + 64034 0.67 0.83196
Target:  5'- cCAGGCGUgCUGGAGCaCcGCCUggaACGCc -3'
miRNA:   3'- -GUUUGCAgGACCUUGaGuCGGG---UGUG- -5'
19222 5' -52.9 NC_004684.1 + 64349 0.67 0.822792
Target:  5'- --cACGUCCUuGAACcCGGUCgGCGCg -3'
miRNA:   3'- guuUGCAGGAcCUUGaGUCGGgUGUG- -5'
19222 5' -52.9 NC_004684.1 + 36076 0.67 0.822792
Target:  5'- -cAACGUCCUGGcuGgUCuGCCCGguCa -3'
miRNA:   3'- guUUGCAGGACCu-UgAGuCGGGUguG- -5'
19222 5' -52.9 NC_004684.1 + 37678 0.67 0.813419
Target:  5'- aCGAugGU-CUGGAGgUUcuGGCCCACGa -3'
miRNA:   3'- -GUUugCAgGACCUUgAG--UCGGGUGUg -5'
19222 5' -52.9 NC_004684.1 + 55606 0.67 0.813419
Target:  5'- aCGGugG-CCUGG---UCGGCCCACGg -3'
miRNA:   3'- -GUUugCaGGACCuugAGUCGGGUGUg -5'
19222 5' -52.9 NC_004684.1 + 41958 0.67 0.803852
Target:  5'- -cAACGgCCUGGAGgaccgcaaggcgUUCuauGCCCGCGCg -3'
miRNA:   3'- guUUGCaGGACCUU------------GAGu--CGGGUGUG- -5'
19222 5' -52.9 NC_004684.1 + 66795 0.67 0.803852
Target:  5'- uCAGGCGgCCcGGAGgUCAGCuCCAC-Ca -3'
miRNA:   3'- -GUUUGCaGGaCCUUgAGUCG-GGUGuG- -5'
19222 5' -52.9 NC_004684.1 + 22119 0.67 0.794101
Target:  5'- -cAGCG-CCUGGcAGCUCAGCgcguCCAgCGCg -3'
miRNA:   3'- guUUGCaGGACC-UUGAGUCG----GGU-GUG- -5'
19222 5' -52.9 NC_004684.1 + 20049 0.67 0.794101
Target:  5'- -cGugG-CCUGGuggccauGCUCGacGCCCACACc -3'
miRNA:   3'- guUugCaGGACCu------UGAGU--CGGGUGUG- -5'
19222 5' -52.9 NC_004684.1 + 4138 0.68 0.784178
Target:  5'- uGAugGUCgUGGAcaagcuGCUCGGgCCgACGCc -3'
miRNA:   3'- gUUugCAGgACCU------UGAGUC-GGgUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.