miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19223 3' -62.5 NC_004684.1 + 66508 0.66 0.379359
Target:  5'- -gCGGCCu--CGCGGGCcgccuucagcgcgGCCCGGCg -3'
miRNA:   3'- uaGUCGGcacGCGCCCGca-----------UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 65805 0.66 0.376025
Target:  5'- ---uGCCGUGCacCGGGCaGgugACCCGGa -3'
miRNA:   3'- uaguCGGCACGc-GCCCG-Ca--UGGGCCg -5'
19223 3' -62.5 NC_004684.1 + 59956 0.66 0.376025
Target:  5'- -cCAGUCG-GCGaaaCGGGUcaGUGCCUGGUa -3'
miRNA:   3'- uaGUCGGCaCGC---GCCCG--CAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 55642 0.67 0.367777
Target:  5'- uUCGGCuggCGUGCGUGGaGgaGgGCCUGGCg -3'
miRNA:   3'- uAGUCG---GCACGCGCC-Cg-CaUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 7583 0.67 0.367777
Target:  5'- -gCGGCUG-GUGCGcGGCa-ACCCGGUg -3'
miRNA:   3'- uaGUCGGCaCGCGC-CCGcaUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 63581 0.67 0.367777
Target:  5'- cAUCGGCC-UGCGCGGcGCGg---CGGUg -3'
miRNA:   3'- -UAGUCGGcACGCGCC-CGCauggGCCG- -5'
19223 3' -62.5 NC_004684.1 + 44931 0.67 0.367777
Target:  5'- -cCGGCCuggaGCGCGGGCGggaucGCCgccgcgccgaCGGCg -3'
miRNA:   3'- uaGUCGGca--CGCGCCCGCa----UGG----------GCCG- -5'
19223 3' -62.5 NC_004684.1 + 8897 0.67 0.367777
Target:  5'- -gCAGUCG-GCGCggcaagaaGGGCGgGCgCGGCa -3'
miRNA:   3'- uaGUCGGCaCGCG--------CCCGCaUGgGCCG- -5'
19223 3' -62.5 NC_004684.1 + 6070 0.67 0.367777
Target:  5'- ---cGCCGc-CGaGGGCGgcgGCCCGGCg -3'
miRNA:   3'- uaguCGGCacGCgCCCGCa--UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 32578 0.67 0.359653
Target:  5'- gGUCGGCUcgcucuacaagGUGUacaagaacgGCGuGGcCGUACCCGGUg -3'
miRNA:   3'- -UAGUCGG-----------CACG---------CGC-CC-GCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 50025 0.67 0.359653
Target:  5'- cGUCGGCgGcaGCGUGGcCgGUGCCUGGCu -3'
miRNA:   3'- -UAGUCGgCa-CGCGCCcG-CAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 39448 0.67 0.359653
Target:  5'- --aGGCCGagGCGUGcGGC-UACCuCGGCu -3'
miRNA:   3'- uagUCGGCa-CGCGC-CCGcAUGG-GCCG- -5'
19223 3' -62.5 NC_004684.1 + 48067 0.67 0.359653
Target:  5'- cUCGGCCacgGCG-GcGGCGUAUgCGGCc -3'
miRNA:   3'- uAGUCGGca-CGCgC-CCGCAUGgGCCG- -5'
19223 3' -62.5 NC_004684.1 + 48972 0.67 0.343786
Target:  5'- --uGGCCG-GgGCGGGCGcgucggUGCCCuGCu -3'
miRNA:   3'- uagUCGGCaCgCGCCCGC------AUGGGcCG- -5'
19223 3' -62.5 NC_004684.1 + 45310 0.67 0.343786
Target:  5'- cGUUGGCgGcGCGUGcGGUGU-CCCGGUa -3'
miRNA:   3'- -UAGUCGgCaCGCGC-CCGCAuGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 61487 0.67 0.343786
Target:  5'- -cCGGUCGUGCGCGaucaGCGccgccgccACCCGGUc -3'
miRNA:   3'- uaGUCGGCACGCGCc---CGCa-------UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 25250 0.67 0.336044
Target:  5'- --aGGCCGUGCGUGGugGCGU---CGGCg -3'
miRNA:   3'- uagUCGGCACGCGCC--CGCAuggGCCG- -5'
19223 3' -62.5 NC_004684.1 + 49503 0.67 0.33146
Target:  5'- -gCGGCgCGU-CGgGGGUGUagcggcccagcgugcACCCGGCg -3'
miRNA:   3'- uaGUCG-GCAcGCgCCCGCA---------------UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 7785 0.67 0.32843
Target:  5'- gGUCgAGCauugGUGCGCGGGaUGUgACCgGGUg -3'
miRNA:   3'- -UAG-UCGg---CACGCGCCC-GCA-UGGgCCG- -5'
19223 3' -62.5 NC_004684.1 + 26886 0.67 0.327675
Target:  5'- --uGGgCGUGCGCGucaaccaggugcuGGCGcACUCGGCg -3'
miRNA:   3'- uagUCgGCACGCGC-------------CCGCaUGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.